Pseudopodoces humilis (Tibetan ground-tit): 102105056
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Entry
102105056 CDS
T02921
Symbol
PDCD11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
phi
Pseudopodoces humilis (Tibetan ground-tit)
Brite
KEGG Orthology (KO) [BR:
phi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
phi03009
]
102105056 (PDCD11)
Ribosome biogenesis [BR:
phi03009
]
Eukaryotic type
90S particles
Other 90S particles
102105056 (PDCD11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S1_RRP5
S1
OB_PDCD11
HAT_Syf1_CNRKL1_N
Spt6_S1
OB_RRP5_4th
HAT_PRP39_N
Suf
OB_RRP5
HAT_PRP39_C
HAT_Syf1_CNRKL1_C
TPR_14
TPR_19
PRP6_TPR
DUF8501
CFAP70_mid_TPR
CFAP70_TPR_C
TPR_YpiA_C
ARM_TT21_5th
TPR_CcmH_CycH
TPR_15
ARM_TT21
TPR_12
TPR_16
Motif
Other DBs
NCBI-GeneID:
102105056
NCBI-ProteinID:
XP_005520764
LinkDB
All DBs
Position
Unknown
AA seq
1832 aa
AA seq
DB search
MASMEENFPRGGIQKKPAEGKTPKPKLERDNLFDVQHEEKSQKRKRSQKDQVKQKRFKAD
KTAAVKDNIMNIGPLTIEVLSEGMLLLGCIKEVNDYDLAISLPNGLSGFVPVTQVSDAYS
KLLTKQVAQGELLEELNSLPELFSPGTLVRCIVTSIEKSDDGRRSVKLSIDPKKVNKGLS
STTLAVGMLLSGSVLSMEDHGYLIDIGVTGTHAFLPHEKAKNYIKAVKKGPDLKIGQNLN
CLIVEVKNEGRVVCLSIDRSEVAASIATERQNWTLSNLLPGLVVKARVQKVAPLGMKLTF
LSYFTGIVDFMHMDPEKSMSYSPDQVVKACVLSVHPTSRAVRLTLRPPFLHPGGTPRQLP
AQRMGAVLEEATVKTFYKQFGAVFELDDGTLAFARLKHLSKTRKSFKPGAFKEGCKHKCR
IIDYSLMDEMCIVSLKHQIIEAQFLQYQDIHTGDVVQGKVVSLKPIGMQVKVADGIRGLV
PSLHLSDVILKQPEKKYNIGDEVKCRVLECNPGGKKLILTLKKSLVQSKLPVLSNYEDAK
PGLITHGFVVCAREFGCIVKFYNDVKGLVPKNELGSEPISCPDKVFFEGQVLKVMVLKCE
PQQERLLLSFRLSSKPGPEDKWKCTPKEKQEVKYQIGEIVDVKILKKKDNGLEVSILEDE
DNVVAWIPTLHLSDFIATSKLLWHCLQEGDVLPRVMYLSDKGEHIILSRKSSVISAVQEE
QVVRSFSEIQPGMLLTGYVRNMMPFGVFVEFPFGVTGLAPKVSMSDKFVTDTKDHFVVGQ
TVIAKVMSIDEEKQRVLLNLKVSECSSGDSAADSVALLNQYFKELKEIKELLRRGKPSIC
ELVPGKRVHLVVQDVREDGSALFSGSPVKGLTITATRYHLEDKNISPGEKRKAFVLHVDA
LTSEVHVSLREELLKQRPKQRLRENSQHSVVVQHITEHFAIASLPGAGQLAAVPIACHFN
DTFRFDSEKLRVGQTISVTLKAVKENNHGVLLAVQGPAKKNVFVRMQNESETVLEEMLPA
VKHSLSPGDVVTGTVKSVRPTHVTVAIDDKLTGSIHASRILDEVPIGSFPTSTLKTGQKV
TARVIGGRDVNTYRCLPITHPHFTQSIPELSIRPSEKEGEFTALLNLKEESSLNKLGLYN
VGQTVICFVKKYNMLKNWLEVEVAPDIRGRVPHLLLSLNTKVLKHPEKSFKNGQAISATV
TGTDASETNLCLSLTGIHSLEPDTISVGKVTKVTPHVGLTIALPGGKTGKVSIFHLNDTY
TEDPLGNFKVGKIVRCYILSNENDKIQLSLRQSRLNPKIKSKVEDIEITSIKDVKKGQLV
RGYVKSITPSGVFFGLSTSLLGRILFQNVSRYFVQNHSLYEKYLPEGKLLTAKVLGVNRK
EEHIELSLLPEDTGMPSVLPESLGLPQYGTEEEKREADDEGKREEPKLKTKRRRGNYESG
QEAKPKKRKICPADENDSGIEVYYREEEEDDQEEEAAKKKSKVGKPGEAPRLQVSMGFTW
DEDNAMDIPVVDQKEESSESEEEEDMRSKLKKRTKKEKDLEKQKREKELCKVEAALMDPS
RQPQSADDFDRLVLGSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLN
VWVALLNLENMYGSEETLMKVFERAVQYNEPLKVFQHLCDIYASSEKYKQAEELYHTMLK
RFRQEKSVWLKYASFLLKQGQAEATHRLLERALKALPTKEHVDVISRFAQLEFHSGDTEH
AKALFESTLSNYPKRTDIWSIYMDIMIKHGSQKEVRDIFERVIHLSLAPKKMKFFFKRYL
DYENKFGTAESVLAVKRAALEYVETKSSLADT
NT seq
5499 nt
NT seq
+upstream
nt +downstream
nt
atggcatccatggaagaaaactttcctcgagggggcatccagaagaaacctgcagaggga
aaaacacccaaaccaaagttagagcgggacaatttgtttgatgttcaacatgaagaaaaa
tcccagaaaagaaaaaggagccagaaggatcaagtaaagcagaaaaggttcaaggcagac
aaaacagctgctgttaaagacaatattatgaatattggaccactcacaattgaggtgctc
agtgagggaatgctgctccttggctgtataaaagaggtcaatgactacgacctcgccatc
agtttgcccaacggcctctccggatttgtgccggtcacgcaggtcagcgatgcctacagc
aaactgctgaccaaacaggtggcccaaggagaactcctggaggagttgaattcgcttcca
gaactgttttctccagggacactggtcaggtgcatcgtgaccagcattgagaaaagtgac
gatggacgtcgcagtgtcaagttatcgattgaccccaagaaggtcaacaagggcctgagc
tctacaacactagcagtgggcatgctgctctctggctctgtgttgagtatggaagaccat
ggctacctcatagatattggtgtcactggaactcatgctttcctgcctcatgagaaagcc
aaaaattacatcaaagcagtcaagaaagggcctgacttgaaaataggccagaacctgaac
tgcctcattgtggaagtgaagaatgagggcagggtggtctgtttgtccattgatcgatcg
gaggtggctgcatccattgccacagagcgacagaactggacactctctaatttattgcca
gggctggtggtgaaagctcgagtacagaaggtggccccacttgggatgaaactgacattt
ctgtcttactttactggcattgtggatttcatgcacatggacccagagaaatccatgagc
tattctccagatcaagtggtgaaggcctgtgtgctgtctgtacaccccacgtcgagggca
gtgcggctcacgctgcgcccgcccttcctgcaccctgggggaaccccacgccagctccct
gcccagcgcatgggggcagtgctggaggaggccacggtgaaaaccttctacaagcagttt
ggggccgtctttgagcttgatgatggcactcttgcatttgcacggttgaagcatctttca
aaaaccagaaaatcctttaaacctggggcatttaaggaaggttgcaaacataaatgtcgg
atcattgactacagcctgatggatgagatgtgtattgtatctctgaaacatcagattatt
gaagcacagtttctgcaataccaggatatccacacgggtgatgtggtgcagggcaaagtg
gtctctctaaaacccattgggatgcaggtgaaagtagctgatgggattagaggacttgtg
ccatccctccatctctctgatgtgatcctgaagcagcctgagaagaagtacaacatagga
gatgaagtcaagtgtcgggtgctggagtgcaatcctggaggaaagaagctgatccttact
ctaaagaaaagtctcgtccaatcaaagcttccagtcctctcaaattatgaagatgcaaaa
ccaggcttgatcacacatggctttgtagtgtgtgcaagggaatttggctgcattgttaag
ttctacaatgatgtcaaaggtctggtacccaagaatgagctgggctcagaacccatatct
tgtccagataaagtcttctttgaaggccaggttcttaaagtaatggtcttaaaatgtgag
cctcagcaggaaagactcttgctgtccttcagattatcaagcaaacctggccctgaggac
aaatggaaatgtactccaaaggagaaacaggaagtgaaataccaaataggagagatagtt
gatgtgaaaatcttgaagaagaaagataatgggttagaagtttccatcttagaagatgaa
gacaatgtggtagcctggatccccacgctgcacctctctgacttcattgctacctccaag
ctcctgtggcactgtcttcaagagggagatgtcctgcccagagttatgtatctaagtgac
aagggagagcacattatcttgagtagaaagtcttcagtgatttctgctgtacaggaggag
caagttgtgagaagcttctctgaaatccagcctggcatgctgttgactggttatgtgagg
aatatgatgccctttggagtgtttgtggagtttccttttggtgtgacaggactggcacct
aaagtgagtatgagtgacaagtttgtgacagacaccaaggaccactttgtggtgggacag
actgtgattgcaaaggtgatgagcattgatgaggagaagcagcgtgtgctcctcaatctg
aaggtgtctgagtgcagctcaggagattctgctgcagatagcgttgccctcctgaatcaa
tatttcaaggagctgaaagaaatcaaggagttgttgagaagaggaaagcccagcatttgt
gagttggtgcctgggaagagggtgcatctggtcgtgcaggatgtgagggaggatggctca
gcactgttcagtggcagccctgtcaaaggcttgactataactgccacccgctaccatttg
gaagacaaaaatatttctcctggtgagaagaggaaggcatttgtacttcatgtggatgcc
ctcacatctgaggtgcatgtttctcttcgggaagaactgttaaagcaaagacccaagcaa
cggctccgagagaattcccagcactctgtggtggtgcagcacatcacagagcactttgcc
atcgcatctctgccgggagcaggccagctggcagctgtccccatcgcctgccacttcaat
gacaccttccgcttcgactcagaaaagctgagggtgggacagacaatttctgtgacctta
aaagcagtgaaggagaacaaccatggggtcttgttagcagtacaaggcccagccaagaag
aacgtttttgtaaggatgcagaacgagtcagagaccgtattagaggagatgcttcctgct
gtgaagcactcgctctccccgggggatgttgttactggtaccgttaaatccgtcagaccg
acccacgtcactgttgctattgatgacaagctgacaggttcaatccatgcatcccggatt
ctggacgaagtgcccataggctcttttccaacttctactctgaaaaccggacagaaagtg
accgctcgagtcattggaggcagagatgtgaatacttacaggtgcctgccaatcacccat
ccacacttcacacaatccattccagagctcagcattcgaccaagtgaaaaagaaggagaa
ttcacagcattgctgaaccttaaagaagaaagttccctcaataaacttggactctacaat
gttgggcagacagtcatctgttttgtaaagaagtataacatgctcaaaaactggctggag
gtagaagtcgcccccgacattcgaggaagagttcctcacctgctgttgtctctgaacacc
aaggtcttaaaacatccagaaaagagctttaaaaatggccaggcaatatcagctacagtg
actggaacagatgcctctgaaacaaacctctgcttgtcacttacaggaattcactcactg
gagccggacaccatctctgtaggcaaggtaacaaaggtgactccacacgttggtttgacc
attgcgctgccaggtgggaagactggcaaagtcagcatctttcacctgaatgatacttac
acagaggatcctctggggaacttcaaagttggcaagattgtcaggtgttacatcctctcc
aatgagaatgataaaatccagttatctctccggcaatctcgactaaatccaaagataaaa
agcaaagtagaggatattgaaataacaagtattaaggatgttaaaaaaggccagctagtg
agaggctatgtcaaatcaatcactccatcaggtgtattctttggattgtccacttctctt
ctgggccgaatcctgttccagaatgtttcccgatactttgtacagaaccattccttatat
gaaaagtaccttcctgaaggaaaactgctcactgccaaagtgcttggggtgaatagaaaa
gaagaacatattgagctctctctcctgcctgaggacactgggatgccaagtgtcttgcct
gaatccctaggcctaccacagtatggaacagaggaagagaaaagagaggcagatgatgag
ggaaaaagagaagagcctaagctgaagacaaaaaggagaagaggaaactatgaaagtggt
caggaggcaaagccaaagaagaggaagatctgcccagcagatgaaaatgacagtggaatt
gaggtgtattaccgtgaggaggaagaggatgaccaggaggaagaggcagctaaaaagaaa
tctaaggtagggaagcctggtgaagctcccaggttgcaagtttccatgggcttcacctgg
gatgaagacaatgcaatggatatacctgtggtggatcagaaggaagagagctcagagagc
gaggaggaggaggatatgcggtccaagctcaagaaacgaacaaagaaggagaaggacctg
gagaagcagaagagggagaaggagctttgcaaagtagaggcagctctaatggacccgagt
cggcagccccagtcagcagatgactttgaccgcctggtgctgggcagtcccaacagctcc
atcctctggctgcagtacatggccttccacctccaggctacagagattgagaaggccaga
gctgtggcagagagagcacttaaaacaatcagtttcagggaagaacaggagaagctgaat
gtctgggtagctctgctgaacttggagaacatgtatggtagtgaggagacactgatgaag
gtctttgagagagcagttcaatacaatgaacctctgaaagtcttccagcatctgtgtgac
atctatgccagttctgagaagtataagcaagcagaagaattataccacacaatgctgaag
cgttttcgtcaggagaaatccgtgtggctgaaatacgcctctttcctcctgaagcaaggc
caggctgaggctacacacaggcttctggagcgtgctctcaaggctctgcccaccaaagaa
catgtggatgtcatttcaaggtttgcacagttggagttccattctggggacacagaacat
gccaaggccctctttgagagcaccctcagcaattatcccaagcggacagacatttggtcc
atctacatggacatcatgatcaagcatggcagccagaaggaagtacgagacatctttgag
agggtcatacacctgagcttggcaccgaagaagatgaaattcttcttcaaacgctacctg
gattatgagaataaatttggtacagcagaaagtgtcctggctgttaaaagagcagcactt
gagtatgtggagaccaagagttcccttgctgatacctaa
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integrated database retrieval system
