Pseudopodoces humilis (Tibetan ground-tit): 102105206
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Entry
102105206 CDS
T02921
Symbol
VPS8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X2
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
phi
Pseudopodoces humilis (Tibetan ground-tit)
Pathway
phi04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
phi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
102105206 (VPS8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
phi04131
]
102105206 (VPS8)
Membrane trafficking [BR:
phi04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
102105206 (VPS8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
TPR_VPS8_2
zf-RING_Vps41
WD40_CDC20-Fz
zf-RING_11
Clathrin
TPR_Vps41
zf_RING_Vps8_fungal
zf-RING_2
zf-RING_UBOX
WDR55
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
102105206
NCBI-ProteinID:
XP_005529651
LinkDB
All DBs
Position
Unknown
AA seq
1389 aa
AA seq
DB search
MAAALEPAEAEPCSDPPAHRLSVAELDRELDSRSELIDDKEFDIPQVDTPPTLESILNET
DDEEESFILEDPFLLNIDNTDTHSYDTSSVASSDSGDRTHLKRKKKLPDSLSLHGSVIRL
SLLKGISAQIVSAADKVDAGLPTAIAASNLIAVGTSHGLALIFDQNQALRLCLGSTAVGA
QYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDAHPPGTAILHIKFTDDPT
LAICNDSGGSVFELSFKRVMGVRTCESRCLFSGSKGEVCCIEPLHAKVDLRDHPITQYSL
LAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVAVQNSVNPMLAFCRGDVV
YFLLVKRDDSGAIHVTKQRQLHLHYDLINFTWINSRTAVLLDSVEKLHVIDRQTQEELET
IEISEVQLVYNSSHFKSLATGGNVSEALALVGEKACYQSISSCGGQVFYLGTKSVHVMTL
RSWRERVDHLLKQERLTDALALAWSFYEGKAKAVVGLTGDTNKRKAVIADRMVEILLHYT
DRALKKCPDQGKIQVMEQHFQDVVPVIVDYCLLLQRMDLLFNQIYDKMSENSVAKGIFLE
CLEPYILSDKLMGITAQVMKDLLLHFQDKNRLENLEACIVHMDITSLDIQQVVLLCWENR
LYDAMIYVYNSGMNDFISPMEKLFKVIAPPLNAGKSLTDEQVVMGNKLLVYISCCLAGRA
YPLGDIPEDLVPLVKNQVFEFLIRLHSAEGSVDEEVYPYVRTLLHFDTREFLNVLALTFE
DFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQLAKPNNTLFVNRTLFD
QVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEESRLIQMAEKAEFYQICEFMYERQL
RYDKIIGCYLRDPLRKEEVFNYIHNILSMPGYSAEEKQLVWQKALDHIEELLVLSPGKAA
DLAAIHFSEQIESIISNLQDKFLLFQFLRSLLDPREGINQDLLHLPPCITEQFIELLSQY
SPDQVLETLKVLEYCRLEETIQITQKHQLHEASSYLLEKKGDIHGAFLVMLERLQSKLLL
LTQDDGSSVEPSLLENIEDTLMKTIALCQRNSHSLDQQQREALWFPLLEAMMSPQKSSGS
SQCPFSESLKSLTMQVLNNMAAFIALPSILQRILQDPVYGKGKLGEIQGLVLGMLDTFNY
EQTLLETTTSLLNHDLHWSLCNLRASVTRGLTPKQDYCCICLQQYKRRQETADEIIVFSC
GHLYHSLCLLSKECGVVNKGLMRWMCYKCNSSNKGGKLSENFSELKKGTAASLAQMSSES
VLDPQQIQAFDQLCRLNRGTSRLALLTELARGGDKHGLLSASHGDPATSSVFQNENFQLH
LTPPPLAEE
NT seq
4170 nt
NT seq
+upstream
nt +downstream
nt
atggctgcggccctcgagccggcggaggccgagccgtgctcggatccgcccgcgcaccgg
ctgagcgtagcggagctcgaccgtgagctggactctcggagcgagctgattgacgacaaa
gaattcgacattcctcaagttgatacccctccaacgctggagagcatcctaaatgagact
gatgatgaagaagagtctttcattttggaggatccttttctcttgaacattgataacaca
gatacacactcctatgacacctcttcggtggccagctctgacagtggggataggacacac
ctgaaaaggaagaaaaaactcccagattctctctcacttcatggatcagtgatacggctc
tcactcctgaaaggaatttctgcccaaatagtgtctgcagcagacaaagtggatgctggc
ttgccaactgcaattgcagcatcaaatctaatagctgtggggacttctcatgggttagca
ctgatatttgatcagaaccaagctctccggctgtgtctgggcagcaccgcagttggggcc
cagtatggggccatctctgctctcagcatcaataatgactgttccaggctgctctgtggc
tttgcaaaaggacagatcaccatgtgggatctggccagtgggaagctgctgcgatcaata
acagatgcccaccctccaggaacagccattttgcacatcaagtttacagatgatccgact
cttgcaatttgcaatgacagcggaggctccgtgtttgaactgtcatttaagagggttatg
ggagtgaggacgtgtgagtctcggtgtctcttcagtggctccaagggggaagtttgctgt
attgagccattacatgcaaaggttgatttgagagaccatcctatcacccagtattcactg
ctggccatggcctccctcactaagatcctggttattggcctgaagccatctctgaaagtg
tggatgacctttccctatggtcgtatggacccctcgagcgtccctctgctagcgtggcac
tttgtggccgtgcagaactcggtgaaccccatgcttgccttctgtcgaggagatgtcgtg
tactttcttctggtcaagagggatgatagtggtgcaatacatgtcacgaagcagaggcag
cttcatctgcactacgatctcatcaactttacttggatcaactcacggacagcagtcctg
ctggacagtgtggagaagctgcacgtcatagaccgtcagactcaggaggagctggagacc
attgagatctcagaggttcagctggtctacaacagcagccacttcaagtctctggccacg
gggggcaatgtcagcgaggccttggcactggttggagagaaagcttgttaccagtccatc
agcagctgtggtggtcaggtcttttaccttggaactaaatctgttcatgttatgacattg
agaagctggagagagagagtggaccaccttctgaaacaagaacgtctcacagatgccctg
gctcttgcttggtccttttatgaaggtaaagcaaaggctgttgtaggcttgactggggac
acgaacaagaggaaagcagtcattgctgacagaatggtagaaatccttctccattacact
gatcgggctctgaagaaatgtcctgaccaaggaaaaatccaggttatggagcagcacttt
caggatgtggtgcctgtcattgtggattactgtctcctgctgcagcgcatggatctatta
tttaaccagatatatgacaagatgagtgagaactctgtagccaaaggcatctttctagag
tgcttggagccgtatatcttgagtgataagctgatgggaatcacagctcaagtgatgaaa
gacttgctgcttcacttccaagacaagaacaggttggaaaacttggaagcctgcattgtg
catatggatatcaccagtttagacatacagcaggtggttctcctgtgctgggaaaaccgc
ctgtatgatgccatgatctacgtctacaacagcggtatgaacgacttcatcagtcccatg
gagaagctgttcaaagtcattgctcctccactgaatgctggaaagtctctcacagatgag
caggtggtgatgggcaacaagctgcttgtgtatataagctgctgcttggcaggccgtgca
tatccgttgggtgatattcctgaagatctggtacctttggtgaaaaatcaggtgtttgag
tttctgatccggctgcactcagctgagggatctgtggatgaggaggtgtatccctatgtt
cggaccctgctgcactttgacacgcgggaattcctcaatgtgctggctttgacttttgaa
gactttaagaatgataagcaagctgtggagtatcaacagagaattgtggacattcttctg
aaagtcatggtggagaattctgacttcaccccatcacaggttggctgtcttttcaccttc
cttgcccggcagctcgccaagccaaacaacaccttgtttgtcaacaggacactctttgac
caggtgctggagttcctgtgcagcccagatgatgactcgcggcattccgagaggcagcag
gtccttttagagctgctccaggcaggagggattgtgcagtttgaagagagccgccttatc
caaatggcagagaaggctgaattctatcagatttgtgagttcatgtatgaacggcagctt
cgttatgacaaaatcatcggctgttacctgcgggatcccctgaggaaggaagaagttttc
aactacatccacaacattctgtccatgcctggctacagtgctgaggagaagcagctggtg
tggcagaaagctttggaccatatagaggagctgctggtgctgagcccaggtaaagcagct
gacctggcagccattcacttcagtgagcagatcgagagcatcatctcaaacctgcaggac
aagttcttgctcttccagttcctgaggagtctccttgatccaagagaaggcattaaccaa
gacctgctacacctcccaccctgcatcactgagcagttcatcgagctgctctctcagtac
agccctgaccaggttttggagacactcaaagttctggaatactgcagactggaggaaacc
atccagataacccaaaaacatcagctccatgaagcttcttcgtatttgctagagaagaag
ggagatatccatggtgcctttttggttatgcttgagcgattgcagagcaagttgctgctg
cttactcaagatgatggaagctcagttgaaccgtccttgctagaaaacattgaagatact
ttaatgaaaacaattgctctttgccagaggaattcacatagtttagaccagcaacagcga
gaggccctctggtttcccctgcttgaggccatgatgtccccacagaaatcctctggttca
tcgcagtgtccattctctgaatctttgaagagtttgacaatgcaagtgctgaacaacatg
gctgcatttattgctcttccctcaatcctgcagaggattctccaggatccagtttatgga
aaagggaaacttggagaaattcaagggcttgttctgggaatgctcgacacttttaactat
gaacaaacccttctagagacaaccacgagccttttaaaccacgatcttcactggtcccta
tgtaacctgagagcctctgtcaccagaggccttaccccaaagcaggattactgctgcatc
tgtctccagcagtacaaaagaaggcaagaaactgctgatgaaatcattgttttcagctgt
ggccatttgtaccactcactgtgcctgctgagcaaggagtgtggggtggtcaacaagggc
ctcatgaggtggatgtgctacaaatgcaactcaagcaacaagggagggaagctgagtgag
aacttctcagagctgaaaaaagggactgcagcatccctggcacagatgagttcagagtct
gtgttggatcctcagcaaatccaagcttttgaccagctctgccgactgaaccgaggcacc
tcccgcctggctctcctgacggagctggcgcgtggcggtgacaagcacgggctgctcagt
gcttcccatggggacccggccaccagcagcgtcttccagaatgagaacttccagctgcac
ctgactccccctccgctggctgaagagtag
DBGET
integrated database retrieval system
