Pseudopodoces humilis (Tibetan ground-tit): 102106061
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Entry
102106061 CDS
T02921
Name
(RefSeq) probable ATP-dependent RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
phi
Pseudopodoces humilis (Tibetan ground-tit)
Brite
KEGG Orthology (KO) [BR:
phi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
phi03041
]
102106061
Enzymes [BR:
phi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102106061
Spliceosome [BR:
phi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
102106061
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
HA2_C
OB_NTP_bind
Helicase_C
R3H
DEAD
AAA_19
HA2_N
Ank_2
nSTAND3
ATPase
AAA_22
Ank_4
NPHP3_N
Ank
PhoH
AAA_7
AAA_16
AAA_30
SRP54
AAA_23
Pox_F17
ResIII
UvrD-helicase
T2SSE
AAA_29
Sigma54_activat
Motif
Other DBs
NCBI-GeneID:
102106061
NCBI-ProteinID:
XP_014112573
LinkDB
All DBs
Position
Unknown
AA seq
1421 aa
AA seq
DB search
MSRPRNVPPRQHGGGAAGSGAPAAPGRGRGGKGLRDIRVDEEVEIAVNLALERFRYGEDT
EMEFPSSFTRTERAFVHRLCHSLGLISKSKGKGANRYLTVRKKDGSELKRAVMTCALTPG
TKRTVHTLIQNFPVTNKERTELLPKTERGNAYAVESENKEVNKTSGRLSDGIPQVPVKRG
QSEFDSFRQSLPVFEKQEEIVKIIKDHKVVLIVGETGSGKTTQIPQFILDDCQKNGTPCR
IFCTQPRRLAALAVAERVAAERREKIGQTVGYQIRLESRVSPKTLVTFCTNGILLRTLMA
GDSTLSTVTHVIVDEVHERDRFSDFLLIKLREVLQSQANLKLIISSAALDADLFIRYFGC
CPVIHIQGRPFEVKEMFLEDILRSTGYTNKEMVKYKKEKQQEEKQQNTLTEWCSGQENSS
KLESERPRSVPRATEEGSLLGDDGDTVFNQLTEKDANCLELWLIKEMDSCLSDIWLHKDI
DAFAQVFHLILTENVSVDYRHSETSATALMIASGRGFLSQVEQLISMGANIHCRSSNGWM
AVDWAKRFGQTEIVDLLESYSASAGFGNLDESSLVRTSGSDLSAEDRELLTAYHHSFDDE
KVDLDLIMHLLYNICNSCDTGAILIFLPGYDEIVSLRDRILFDDRRFADNAHRYQVFMLH
SNMQTLDQKKVLKSPPPGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALSCVTM
LKMVWISKASAIQRKGRAGRCRPGVCFRLFSRLRFENMLEFQTPELLRMPLQELCLHTKL
LAPINCSVVEFLMKAPDPPPALIVKNALQMLKTIDAMDPWEDLTELGYHLTELPVEPHLG
KMVLCAVVLKCLDPVLTIACALAYRDPFVLPTLASQKRAAMLCRKRFTAGTFSDHMVLLR
AFQGWQKARSDGWERAFCEKNFLSQATMQIIVGMRTQLLGQLRASDFIRARGGADIRDVN
ANSENWAVVKAALVAGMYPNLVHVDRGSLVLTAPKEKKVRFHPTSVLSQPQYKKIPPVNG
QAAAVQALPTDWLIYDEMTRAHRIANIRCCSVVTPVTVALFCGPARLPSNALQASSSCQG
DRVSSDSSDSEVEDQKTSNVSLLKLDEWLHLTLDSEAAGLLLQLRQKWHSLFLRRMRSPS
KSWSQVDEATVRAVVAVLTAEEQSAGLQQPSGIGQRPKPVASEDRLLASTWRSTNTRRST
AETEFSDSSNAEKVVMRPARPVLHQPKNYKRKNILHYKQTSDDRSDRSSVKSADSSSFPS
PCASPSSPICGKASKSPSPRQNMPIRYFIMKSSNLQNIEISQQKGIWSTTPSNERKLNGA
FWESTMVYLIFSVQGSGHFQGFARMGSSIGCEKSQDWGSPGFGGVFKVEWIRKESIPFHF
AHHLLNPWNDNKKVQISRDGQELEPRVGEQLLQLWDHIPLE
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcggcccaggaacgtcccgccgcggcagcacggcgggggcgcagcgggctcgggc
gctcccgccgcgccgggccgcggccgaggcggcaaaggtctgagggatatccgcgtggac
gaggaagtggagatcgcggtgaacctcgctctggagcggttccgctacggcgaggacacg
gagatggaattcccatcttctttcactagaaccgaaagagcgtttgttcaccggctctgt
cattctcttggactgatatcgaaaagtaaaggaaaaggagcaaatcgatacctaactgta
agaaaaaaggatggatcagaactaaaacgtgcagtaatgacttgtgccttaactcctggt
acaaaacgcactgttcatactttaattcagaattttcctgtcacaaataaagaaagaaca
gaacttctgccaaagacagaacgagggaatgcctatgctgttgaatctgaaaacaaagaa
gtgaacaagacaagtggacgacttagtgatggtatcccccaggttccagtgaaaagaggg
caatcagagtttgattccttcaggcaatcactcccagtttttgaaaaacaggaagaaatt
gttaaaataataaaggaccataaagttgttttgattgtaggagagactggatcaggaaaa
actactcaaatcccccagtttattcttgatgactgtcaaaaaaatggaactccctgccgt
atattttgcactcagccaagacgtttggcagcacttgctgtggctgaaagagtggcagca
gaaagaagagaaaagattggccagacagttggttatcagatccgattagaaagcagggtt
tctccaaagacactggtaaccttttgcactaatggcatactgcttcgcacactgatggca
ggagacagcaccctgtcaactgtgacacatgtaattgtggatgaagtacatgagagggat
aggttcagtgacttcttgctaataaaactgagagaagtgttgcaaagccaagctaattta
aaactaattatttctagtgctgctctagatgcagatctctttattaggtattttggatgc
tgtccagtaatacacatccaaggaagaccttttgaagtcaaagagatgtttttggaggac
atcttacgaagtactgggtatacaaacaaagagatggtaaagtacaaaaaagagaagcag
caagaagaaaaacagcaaaacactcttactgagtggtgttctggtcaagaaaatagtagt
aagctggaatctgagagaccaagatctgtcccaagggcaactgaagagggtagtctgttg
ggtgatgatggtgacacagtatttaatcaactgactgaaaaggatgcgaattgtcttgaa
ctatggttaataaaagaaatggattcttgtctttctgacatctggttgcataaagatatt
gatgcctttgctcaggtgttccatctcattttaactgaaaatgtcagtgttgattatagg
cacagtgaaaccagtgcgactgcactaatgattgcttctgggagaggctttttgagtcaa
gtagagcagctaatcagtatgggagcaaatatccactgcagatcatctaatggctggatg
gctgtggactgggctaagcgctttggacagacagagattgttgacctgttggaatcctac
agtgcttcagcgggttttggaaatctggatgaaagttccctggttcgaacaagtggtagt
gaccttagtgcagaggacagagaactgttgacggcttatcatcacagttttgatgatgaa
aaagtggatttggacctcattatgcacttactttataacatctgtaatagttgtgacacc
ggagcaattttaatatttcttcctggatatgatgagatagttagcctgagggaccgtatt
ctttttgatgacaggagatttgctgacaacgctcacagataccaggttttcatgcttcat
tcaaatatgcaaactttggatcagaagaaagtgcttaaaagtccacctcctggtgtgcgc
aaaataattctttctacaaacatagcagaaaccagcataacagtcaatgatgttgtattt
gttattgattcaggcaaggtgaaagagaagtcttttgatgcactgagttgtgttacaatg
ctaaaaatggtgtggatttcaaaagccagtgctatccagagaaaaggcagggctgggcgc
tgtcggcctggagtctgttttcgtctcttcagtaggctccgatttgagaatatgttggaa
tttcagactccagaacttttaagaatgccacttcaggagctttgtttacacacaaaactt
ctggctccaattaattgttcagttgttgagtttcttatgaaagctcctgatcctccacca
gctttaattgtgaaaaatgctctacaaatgctcaagactatagatgccatggacccttgg
gaagatctcactgaacttggttatcatctcaccgaattgccagtggagccacacctcggt
aaaatggtgttgtgcgccgttgttttgaagtgcctggatcctgtccttaccattgcttgt
gctcttgcctaccgagacccttttgtgctgcccacgctggcctctcaaaagcgtgcagcc
atgctgtgtaggaagcgttttactgcgggaaccttcagcgaccacatggtgcttctcagg
gctttccaggggtggcagaaggcacgcagtgatggctgggaaagagccttctgtgaaaag
aacttcctgtctcaagccactatgcaaatcatcgtaggaatgagaacacagttgcttggc
cagcttagagcctcagattttattagagccagaggaggagctgatattagagatgttaat
gctaactctgaaaactgggctgtagttaaagctgccttagtggccgggatgtatcccaat
cttgtgcacgtagacagagggagcctggttttaactgcaccaaaggagaagaaagtgcga
tttcatcctacctctgttcttagtcaacctcagtataaaaagattcccccagtgaatggt
caagctgcagctgttcaagcacttcctacagactggctgatatatgatgaaatgacaaga
gcccacaggatagcaaacatcaggtgctgttctgttgtaacacctgtcactgtggctctc
ttctgtggaccagctaggttaccaagtaatgctttacaggcatcttcatcctgtcaagga
gacagggtatccagtgatagcagtgacagtgaagtggaggaccaaaaaacttctaatgta
tcactgctgaagctagatgaatggctccaccttacactggactctgaagctgctggtttg
ctgttgcaactcagacaaaagtggcatagcttatttctgcgtcgtatgcgatctccttct
aaatcgtggtctcaagttgatgaagcaactgtaagagcagttgtagctgttttaactgct
gaagagcagtctgcaggtttgcagcaaccttcaggaattggtcagagaccaaaacctgtg
gcttctgaagatcgtcttttagcatcgacatggagatcaactaacaccaggagaagtact
gcagaaactgagttctctgactcttctaatgctgaaaaagttgtaatgaggcctgcacgt
cccgtacttcatcagccaaagaattacaaacgaaaaaatattttacactacaaacaaact
tcagatgacaggtcggatcgatcatctgtgaagtctgcagacagcagtagcttccctagc
ccctgtgctagtccgtcttctccaatatgtggaaaggcttccaaatcaccttcaccaaga
caaaatatgccaattaggtacttcataatgaaaagtagcaacctacagaacattgaaatt
tctcagcagaagggtatatggtccactactccaagtaatgaacgaaaactgaacggagcc
ttttgggaaagcaccatggtttacttaatattttctgttcaagggtctgggcatttccag
ggctttgctagaatgggttcatcaatagggtgtgagaaaagtcaggactggggatctcct
ggatttggaggtgtatttaaggtggagtggatccgaaaggaaagcattccttttcatttt
gcacatcatttgctgaacccttggaatgacaataagaaagtacaaataagcagagatgga
caggagctggaaccgcgagttggagagcagttgctgcagctttgggaccatattcctttg
gaatga
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integrated database retrieval system
