Pseudopodoces humilis (Tibetan ground-tit): 102106293
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Entry
102106293 CDS
T02921
Symbol
COL17A1
Name
(RefSeq) collagen alpha-1(XVII) chain
KO
K07603
collagen type XVII alpha
Organism
phi
Pseudopodoces humilis (Tibetan ground-tit)
Pathway
phi04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
phi00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
102106293 (COL17A1)
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Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
DUF4869
Motif
Other DBs
NCBI-GeneID:
102106293
NCBI-ProteinID:
XP_014105623
LinkDB
All DBs
Position
Unknown
AA seq
1501 aa
AA seq
DB search
MDSITKKTRQDGSEVTERLITETVTTRLTSLPPKGGSSSGLKTSSHTGGSGVEKRSYSHG
SYVTSSGSGRLNSTSSSSSYRQAQSPSSTLTKSPGSTFERKTYVNRHATYEGSSSANSSP
EVPRKDFASASTRGRSQSRESEIRVRLQSASPSGRWTELDDVKRLLKGSRSTSCSPTRSP
SSTLPIPKKAVVETKMVTESSQSVSGTYDTTILNTALPSYMWSSTLPAGSSLGGYHNSSS
LINAMSHSTGSVFGVPNNLAPSNHTLNAGLSSSSTVFGVQNNLSPSSSSTAQNATAASAA
YGIKNTSQSNTMASTGVSASAGGTVLSSQGDDVLRKDCKFLLLEKEKAPAKEMELLVMTK
DTGKVFNASNTGLNGGSFVEDTLKKEKQGFSSSYATDTGLKSDANGGLKSMPKRDKETYA
EIRSGDAGGAVGSTPSWCPCGSCCSWWKWLLGLLLAWLFLLGLLFGLIALAEEVRKLKSR
VEDLEKINGGLLAFNQGNSKIEKDVSRVDFLHGNSLSSTFPYENEESVWLMVKSRLNKEI
ERGYFRGERGERGEKGDMGIQGPKGDRGLPGVPGIPGPIGHAGPEGPKGQKGSMGEPGME
GPMGQRGREGIPGPRGEPGPPGFGAKGDRGKSQPGPPGPPGPPGSAGLKGLMGSPGPQGP
PGPPGLQGFRGEAGLPGAKGEKGASGPPGPKGDQGEKGSRGMTGEQGSRGIPGPPGEPGA
KGPVGQAGRDGQPGEKGEPGLMGMPGARGPPGPTGDAGEPGLTGLQGPPGLPGNPGRPGA
KGEPGAPGRVISAEGSSTISLPGPPGPPGPPGPTGPPGVPGPVGPAGLPGQQGPRGEKGS
PGEAVVETIRTEVSSLASQMLGDLQGRAGPPGPPGPPGESVQGPPGPRGPPGLPGPPGPP
GRPGSSMSTSEAFFTGPPGPPGPPGPKGDQGERGPRGFTGEPGDPGLSTFSSHGERVTIQ
GPPGPPGPPGPKGDAGVPGAPGIPGASRGGSRQIQGPPGPPGPPGPPGPSGGSSQEIQQY
VTDYLKSDNVRHYLTGAQGPPGPPGPPGLITTADGVTLDYAELATRVMSYMTSSSGRYES
FSSSVSSTSTLYQELLGLLQREEIRQYLIGPQGPPGPPGPGGDGMSLSLDYDELTRRFIN
YLSNSGMSIGLPGPPGPPGSPGISYNDLTAYLRNSEFSGVVGPPGPAGPPGPPGIPGSPG
TSLEDISAYLQNAGYSSLSGVRGPPGPPGPPGPPGFSGTGLLSYADITNSDEFRSELIQY
LKSDEVRSYISGPPGPPGPRGPPGPKGDSGFVSESVSSSYQGLRASEHLHGGSLGAEDSH
GGSLGTGSSRSSMSSYHALVGSNGAYDASMGIDGLLTEEESHSRSAGSSRSYSNSFTGSL
DYNELALRVSESLQSRGILQDLMSYTAQGPAGPPGPPGPPGISKVFAAYGNVTADLMDFF
RTHGAIQGPPGEKGERGYRGPKGDPGPMGPPGRQGHRGPKGEKGEKGEQLYVGRRKRSVG
V
NT seq
4506 nt
NT seq
+upstream
nt +downstream
nt
atggattctataacaaagaaaacgaggcaagatggatcagaagttactgaaagacttatt
acagagactgtaaccacaagactgacatccttgccacccaaaggaggaagcagcagtggg
ctcaaaacatcatcccacactggagggagtggagtggaaaagcggtcgtacagccatgga
agctatgtgacctcaagtggaagtggtagattgaattcaacatcatcatcctccagctac
agacaagcccagtctcccagttctactctcaccaaatcacctggctcaacatttgaaaga
aaaacctatgtcaaccgccatgcaacatatgaagggagctccagtgccaactcttctcct
gaggttcccagaaaagattttgcatctgcctctacgagagggagaagccaaagtcgagag
agtgaaatacgagtccgactgcagagcgcatctccctctggcagatggacagagttggat
gatgtgaaacgtttgctgaaaggaagtcgatctaccagctgcagccctactcggtcgcca
tccagtacactcccaataccgaaaaaggctgtggtggagacgaagatggtcactgagagc
tctcagtcagtgtcggggacatatgacacaaccatactgaatactgccctcccttcatac
atgtggtcttccactctgcctgctgggtcttcccttggtggataccataacagctcttcc
ttgatcaatgccatgtctcactctacaggatcagtttttggtgttccaaataacctggcc
cccagcaatcatactctgaatgcaggcctgagctcttcctctacagtatttggagtccaa
aacaacctgtctccaagctcttcttctacagcccagaatgctacagcagcctctgcagca
tatgggataaagaacacttctcagagcaacaccatggcaagtactggtgtgtctgcctca
gcaggaggaactgttttgagctcccagggagatgatgttctgcgcaaagactgcaagttc
ctgctgctggagaaggagaaggcaccagcaaaggagatggagctcttggtcatgacaaag
gacactggcaaagtctttaatgcttctaacactgggcttaatggaggatcttttgtagaa
gacaccttgaagaaagagaagcagggattttcctcctcttatgctacagatactggccta
aaatcagatgcaaatggagggctgaaatccatgccaaaaagggacaaggaaacttatgca
gaaatacgaagtggtgatgcaggaggtgcagttggatcaacaccatcctggtgtccctgt
ggttcctgctgtagctggtggaaatggctcctgggtttgcttctagcctggttgtttctc
cttggattgctttttggactcattgctctggctgaagaagtgagaaagctgaaatctcgt
gtggaagacctggaaaaaattaatggtggcctcctggcatttaaccaagggaattcaaaa
atagaaaaggatgtttcaagagtagactttcttcacggtaactcactctcctccaccttc
ccatatgaaaatgaagagtcagtctggttgatggtgaagagcagactgaataaggaaata
gaacgaggctacttccgaggggagagaggagaacgtggtgagaaaggtgacatgggaata
caaggtcccaaaggtgaccgaggacttcctggtgtcccaggcattcctggtccaattggg
catgcaggaccagaaggaccaaaaggacagaagggaagcatgggtgagcctggcatggaa
ggtcccatgggacaaagaggtagagaagggataccagggcctcgaggggagccaggacca
cctggatttggagcaaaaggagacagaggtaagagtcaaccaggtccgccagggccacct
ggacccccaggttctgctggcctaaaaggtctcatgggttctccaggcccacaaggccct
ccaggtcctcctggcctacaaggatttagaggtgaagcaggactcccaggtgctaaaggt
gaaaaaggagccagtggaccccctggacccaaaggtgatcagggtgagaagggttctcgt
ggaatgacaggtgaacaaggctcaagaggaatacctggacctccaggagagccaggggct
aaaggacctgtgggacaagcgggtcgtgatggacagccaggtgaaaaaggtgaaccaggc
cttatgggaatgccaggtgccagaggccctccaggacccactggagatgctggagagcca
ggtcttacaggactccaaggaccaccagggcttccaggcaaccccggccgaccaggagct
aaaggagaacctggagctccaggaagagtcataagtgcagagggttcatcaactattagt
ctgccaggcccaccaggtcccccaggcccacctggccccactggtcccccaggtgttcca
ggtcctgttggaccagctggtcttcctggacagcaaggtccacggggtgagaaaggatct
ccaggtgaagctgtggtagaaaccatcagaacagaagtctcatcattagcatctcaaatg
ctaggagatttacaagggcgagcaggaccaccaggtccccctggaccaccaggtgaatct
gtacaaggaccccctggacctcgtggtcccccaggattgccaggacctccaggcccacca
gggagaccaggatcatccatgtccacctcagaagcattcttcacaggcccaccaggtcca
ccaggaccaccaggcccgaagggagaccaaggcgaacgaggtccacggggattcacagga
gaaccgggtgatcctggtctttcaacattctcctcccatggtgaaagagtcaccatacag
ggacccccaggcccgcctggcccacctggaccaaaaggtgatgcaggtgtcccaggtgca
cctggcatcccgggagcatctcgaggtggatccagacaaattcagggacccccaggacct
cctgggccacctggtcctcccggcccaagtggaggttcatctcaagagattcagcagtat
gtcactgactacctgaagagtgacaatgtcagacattatttgactggtgcccaaggcccg
ccaggccctccaggcccacccggacttatcaccactgcggatggggtgaccttggattat
gcagagctggctacccgtgtcatgagctatatgacaagctcttcaggtcgctatgagtca
ttttctagctcagtatccagtacatccactttgtaccaagaacttctgggcctgctgcaa
agagaagaaattcgtcagtacctcattggaccccaaggcccaccaggacctcctgggcca
gggggagatggaatgtctctgtcactggattatgatgagctgaccaggaggtttatcaac
tacttgtcaaattctgggatgagcattggactgcctggaccacctgggcctccagggtca
cctggtatatcttacaatgacctgacagcgtacctgcgaaactctgaattcagtggtgtt
gttgggccccctggtcctgcaggtcccccaggaccaccagggatccctggatcaccaggc
acctctctggaggacatttctgcctaccttcaaaatgctggatactcttccctttctgga
gtccggggcccacctggccctcctggccctccaggaccaccaggtttctctggaaccggc
ctcctgtcctatgctgatatcaccaacagcgacgagttcaggagtgagctgatccagtac
ctgaagagtgatgaagttcgaagctacatctcaggaccccctggcccccctgggccacgg
ggaccaccaggacccaaaggagacagtggctttgtgtctgagtctgtgtcttcatcgtac
caagggttacgagcttctgagcacttgcatggaggatcccttggtgctgaggactcccat
gggggctcactgggcacaggcagctccagaagcagcatgtcctcttaccatgccttagtg
ggcagcaatggtgcttatgatgcctccatgggcattgatgggctgctgacagaggaagaa
tcacacagcagatcagcagggtcaagcagatcctacagcaactcctttaccggttccctg
gattacaacgagctggcactccgtgtgtcagagagcctgcagagccgaggtattctccag
gacctgatgtcttacactgcacagggccctgcaggtcccccaggccctcctggtccccct
ggcatcagcaaggtctttgcagcctatggcaatgtcaccgcagacctcatggacttcttt
agaacacatggtgccatccaggggccacccggtgaaaagggggagaggggttatcgggga
cccaaaggtgaccctgggccgatgggcccaccaggacgacaagggcacaggggaccaaaa
ggagagaagggagagaaaggtgaacaactgtatgttggcagaagaaaaagaagtgttggt
gtttaa
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