Pseudopodoces humilis (Tibetan ground-tit): 102106802
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Entry
102106802 CDS
T02921
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
phi
Pseudopodoces humilis (Tibetan ground-tit)
Pathway
phi04140
Autophagy - animal
phi04142
Lysosome biogenesis
phi04148
Efferocytosis
phi05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
phi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
102106802 (VPS39)
04140 Autophagy - animal
102106802 (VPS39)
04148 Efferocytosis
102106802 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
102106802 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
phi04131
]
102106802 (VPS39)
Membrane trafficking [BR:
phi04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
102106802 (VPS39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
VPS18_solenoid_2nd
Beta-prop_RIG_2nd
Lgl_C
LIF1_N
EcoR124_C
Motif
Other DBs
NCBI-GeneID:
102106802
NCBI-ProteinID:
XP_014107615
LinkDB
All DBs
Position
Unknown
AA seq
875 aa
AA seq
DB search
MHDAFEHVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIKKDVGCNRFEVTLEKSNK
NFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTISKAKGASLFTCDLQQSDTGE
EVLRMCVAVRKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFKRDYYLIRVD
GKGSIKELFPTGKQLEPLVAPVADGKVAVGQDDLTVVLNEEGVCTQKCALNWTDIPIAME
HQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGTNIIYVASNHFVWRLIPVSI
ATQIQQLLQDKQFELALQLAEMKDDSDSEKRQQIHHIKNLFAFNLFCQKRFDESMQVFAK
LGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPGLSGAELEKAHLALIDYLTQKRSQLVKKL
NDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEE
SEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENL
HLVFSYSVWVLRDFPEDGLKIFTEDLPEVEALPRDKVLSFLIENFKSLTIPYLEHIIHVW
EETGADFHNCLIQLYCEKVQGLMKEYLSSFPADRAPVPAGEEGGDLGDYRKKLLLFLEKS
SWYEPSRLISDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTNMAENYCHKHYDRNK
DGNKDVYLSLLRMYLSPPSVHCLGPIKMEVLEPQANLQAALQVLELHHSKLDTTKAINLL
PANTQISEIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQVKCIITEEKV
CTVCKKKIGNSAFARYPNAIVVHYFCSKEVNTLDT
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgccttcgagcatgtgccgatcctggagaagctgccgctgcagatcgactgt
ctggcggcctgggaggaatggctccttgttggtaccaaacaagggcatcttctgctctac
aggatcaagaaggatgtaggttgcaataggtttgaagtgacactagagaaatcaaataag
aacttctcaaagaagattcaacagattcatgttgtttctcaatttaagattttggtcagt
ctattagaaaataacatttacgtccatgacctgttgacatttcaacaaatcaccacaatt
tcaaaggcaaaaggtgcatctctcttcacttgtgatctccagcaatcagatacaggggaa
gaggtgctgaggatgtgtgtggcagtgcgtaagaagctacagctttatttctggaaggac
agagagttccatgagctgcagggagacttcagcgtacctgatgtacccaaatctatggcc
tggtgtgaaaactccatctgtgtaggcttcaagagggactattatttgatacgggtggat
ggaaaaggatccatcaaagaactgtttcccacagggaagcagctggaaccattggtagct
cctgtagcagatggaaaagttgcagttggccaagatgatctaacagttgtgcttaatgaa
gaaggggtctgtactcagaagtgtgccttgaactggacagatattcctatagccatggaa
caccagcctccctacatcattgctgttctgccaaggtacgtggagatccgcacttttgaa
ccccggctgctggtgcagagcatcgagctgcagaggccacgcttcatcacctctggaggc
acaaacatcatatatgtggcaagtaatcattttgtttggaggctcattccggtgtccata
gccacgcagatccagcagcttctgcaggacaaacagtttgagttggctttgcagttggca
gaaatgaaagatgattcagatagtgagaagcgacaacaaattcaccacataaagaacctc
tttgccttcaaccttttctgccagaagcgttttgatgaatccatgcaagtttttgccaag
cttggtacagatcccactcatgtgatgggtctgtatccggacctcctgcccacagattac
aggaaacagctacaatatcccaaccccctcccagggctctctggggcagagctggagaag
gcacatttagctctgatagactacctaactcaaaaaaggagtcagctagtgaagaagcta
aatgattctgatcatcagtccagtacctcacccctcatggaaggaacacccacgatcaaa
tccaaaaagaagctgctacaaatcattgataccaccctgttaaagtgttacctgcataca
aatgtagcactggtggcaccgctgctacgtctggagaacaatcactgccatattgaggag
agtgagcatgtactaaagaaggcacacaaatacagtgagctgataatactgtatgagaaa
aaaggtctgcatgagaaagcattacaggtactggtggatcagtcaaagaaagccaactca
cctttgaagggtcatgagaggacagtgcagtatctgcagcatttgggcacagagaacttg
cacttggtattttcctactctgtttgggtgctaagagattttcctgaagatggactgaag
atatttacagaagatctccctgaagtggaagctttgccacgagacaaagtgctcagtttc
ttgatagaaaattttaaaagcttgactattccttacctggaacacatcattcatgtctgg
gaagaaaccggtgcggactttcacaactgtctgatccagctgtactgtgagaaagtgcag
ggcttaatgaaagagtatctcagttctttccctgcagatagagctccggtgcctgctggg
gaggaaggaggagacttgggggattaccggaagaagctgctgctttttttggagaagtct
agctggtatgaacctagtcgacttattagtgacttcccttttgatggtctcctagaagaa
cgtgctctgctcttgggtcgtatggggaagcatgagcaagctctgtttatttatgttcat
attttgaaggacaccaacatggctgaaaactactgccataaacattatgacagaaacaaa
gatggcaacaaagatgtgtatctgtccctgctccgcatgtatctctccccacccagtgtt
cattgtctgggaccgatcaagatggaggtgctggagcctcaagccaatctgcaggctgct
ctgcaggttttggagctgcaccatagcaaactggataccactaaggcaataaacctgctc
ccagcaaatacacagattagtgagattcgcatcttcttagagaaagtacttgaagaaaat
gctcagaagaaaagatttaatcaagtgctcaagaatcttctccatgcagagtttctgagg
gtccaggaggagcggatcttgcatcagcaagtaaagtgcattattacagaggagaaggtg
tgcactgtttgtaaaaagaagataggtaacagtgcatttgctcgataccctaatgcaata
gtcgtgcattatttctgctccaaagaagtcaatacactggacacctga
DBGET
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