Pseudopodoces humilis (Tibetan ground-tit): 102107102
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Entry
102107102 CDS
T02921
Symbol
CPSF2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
phi
Pseudopodoces humilis (Tibetan ground-tit)
Pathway
phi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
phi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102107102 (CPSF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phi03019
]
102107102 (CPSF2)
Messenger RNA biogenesis [BR:
phi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
102107102 (CPSF2)
U7-dependent histone pre-mRNA processing factors
102107102 (CPSF2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
102107102
NCBI-ProteinID:
XP_005520240
LinkDB
All DBs
Position
Unknown
AA seq
782 aa
AA seq
DB search
MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDSLRKHVHQVDAVLL
SHPDPLHLGALPYAVGKMGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD
AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLSLCHSLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDSKNSIILTYRTT
PGTLARFLIDNPAEKVIDIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQSKEADIDSS
DESDAEEDIDQPTLHKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEII
KPEDFLVPELQATEEEKSKLESGLTNGEEPMDQDLSDVPTKCISATESMEIKARVTYIDY
EGRSDGDSIKKIINQMKPRQLVIVHGPPEASQDLAECCRAFGGKDIKVYMPKLHETVDAT
SETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGELREDEDIE
MQVDVPSSDSSVIAQQKAMKSLFGDDDKEMCEESEIIPTLEPLPPHEVLGHQSVFMNEPR
LSDFKQVLLREGIQAEFVGGVLVCNNLVAVRRTETGRIGLEGCLCQDFYRIRDLLYEQYA
IV
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgacatcgattatcaagttgactacgctctcgggagtgcaggaggaatctgccctttgc
tatctattgcaagtagatgagtttcgtttccttttggactgtggctgggatgaaaacttt
tctatggatattattgattctctgaggaagcatgtacaccaggttgatgctgttcttctt
tctcaccctgaccctctacaccttggtgcacttccatatgcagttggaaaaatgggattg
aattgtgccatttatgccactattcctgtatataaaatgggacagatgtttatgtatgat
ctctaccagtcccgccataatactgaggatttcacgctctttacattggatgatgtagac
gcggcctttgataagatacaacagctgaagttttctcagattgtgaacttaaaaggcaaa
ggacatggtttgtcaatcacaccattgccagctggtcacatgataggaggcacaatttgg
aagattgtcaaggacggggaggaagaaattgtttatgccgttgatttcaaccacaagagg
gagatccatctgaatggatgttccttggaaatgttgagcaggccttcattacttattaca
gattcatttaatgcgacttatgtacagcccaggaggaagcaaagggatgaacagctgctg
actaatgttttggagacgttacgaggtgatggaaatgtattaatagccgtggatacagca
ggcagagttctggaacttgctcagcttcttgatcagatctggagaacaaaagatgcagga
ttaggagtctactctcttgcacttttgaataatgtcagctacaatgtagtggagttctct
aaatcacaggttgaatggatgagtgacaagttgatgaggtgctttgaagacaagagaaac
aacccttttcagttccgccatctctccttatgtcacagtctgtctgatctggctcgagtg
cctagtccaaaagttgttcttgccagtcagcctgacttggagtgtgggttttctagagat
cttttcattcaatggtgccaggattccaaaaactccataattttaacttatcgcactaca
cctggaacattagcacgattcctgattgataatcctgctgaaaaagtcatagatattgag
ttgagaaaacgtgtcaagttggaaggaaaagaacttgaagaatacctagaaaaggagaaa
ctaaagaaagaggcagctaagaaattagagcagtctaaagaggcagatattgattccagt
gatgagagtgatgctgaggaggatattgatcagccaactttacataagaccaaacatgat
ttgatgatgaaaggtgaaggtagccggaaaggaagcttcttcaaacaggcaaaaaaatcg
tatccaatgtttccagctcctgaagaaagaattaaatgggatgaatatggtgaaattatc
aaacctgaggattttctagttccagaacttcaagcaacagaagaagaaaaaagcaaattg
gaatctggtttgacaaatggagaggagcctatggaccaggatttatctgacgttcctacc
aagtgtatttctgcaacagaatccatggaaattaaagccagagttacgtacattgactat
gaaggacgttcagacggggactcaattaaaaaaattattaaccaaatgaaaccaagacaa
ctggtcattgtccatggaccacctgaggccagtcaggaccttgcagaatgttgcagagct
tttggtggaaaagatattaaagtttacatgcccaaacttcatgaaactgtagatgctaca
agtgaaactcatatttaccaggtccgattgaaagattctcttgtcagctctcttcagttc
tgtaaagccaaggatgctgagttggcttggatagatggtgttctggacatgagggtttca
aaagtggatactggagttattttggaagagggagagttgagggaagatgaagacatagag
atgcaagtggatgtgccttcttcagactcgagtgtgattgcacaacagaaggccatgaag
agcctctttggtgatgatgacaaggagatgtgtgaggagagtgagatcattcctactttg
gaacctctgccacctcatgaggttcttggacatcagtctgtgtttatgaatgagccaaga
ctgtctgacttcaagcaggttctcttgcgggaaggtatacaagctgaatttgttggagga
gtgcttgtgtgcaacaacttggtggctgtccgcaggactgaaacaggacgtattggattg
gaaggctgcctctgccaggacttctataggataagagaccttttatatgagcaatatgct
attgtctaa
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