Pseudopodoces humilis (Tibetan ground-tit): 102107384
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Entry
102107384 CDS
T02921
Symbol
SKIV2L2
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
phi
Pseudopodoces humilis (Tibetan ground-tit)
Pathway
phi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102107384 (SKIV2L2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phi03019
]
102107384 (SKIV2L2)
03041 Spliceosome [BR:
phi03041
]
102107384 (SKIV2L2)
03009 Ribosome biogenesis [BR:
phi03009
]
102107384 (SKIV2L2)
03016 Transfer RNA biogenesis [BR:
phi03016
]
102107384 (SKIV2L2)
Enzymes [BR:
phi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102107384 (SKIV2L2)
Messenger RNA biogenesis [BR:
phi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
102107384 (SKIV2L2)
Spliceosome [BR:
phi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
102107384 (SKIV2L2)
Complex C
U4/U6.U5 tri-SnRNP related factors
102107384 (SKIV2L2)
Ribosome biogenesis [BR:
phi03009
]
Eukaryotic type
Pre-60S particles
Helicases
102107384 (SKIV2L2)
Transfer RNA biogenesis [BR:
phi03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
102107384 (SKIV2L2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Helicase_dom4_arc
AAA_22
Motif
Other DBs
NCBI-GeneID:
102107384
NCBI-ProteinID:
XP_005531215
LinkDB
All DBs
Position
Unknown
AA seq
1034 aa
AA seq
DB search
MAEAFGDELFSVFEEDAAAAASVAKKNKTGPAEGARRPGKRLEEKPSVPAIVKPKRELEI
DSTENVILGKKPKLEDVLSEDVNLTDLMPQVKVQSVETVEGCTHEVALPANEEFTGLKPR
TGKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFT
SPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAW
VIFDEIHYMRDTERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIY
TDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGT
KGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAI
DCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMG
INMPARTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIG
KQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRTIPEIVERVNNL
EAQYNKIVIPNEENVVIYYRIRQQLAKLGKDIEEYIHKPKYCLPFLQPGRLVKVKNEGDD
YGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLHCTKDSLKNSATESAKPARPDERGEMQV
VPVLVHLVSAISSVRLYIPKDLRPIDNRQSVLKSVQEVQKRFPDGVPLLDPIDDMGIKDQ
GLKKVIQKIEAFEHRMYSHPLHNDPNLETIYKLCEKKAQIAMDIKVAKRELKKARTVLQM
DELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATAL
LSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLETDEENYLNSFKPNLMD
VVYTWANGANFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGIT
KIKRDIVFAASLYL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggcctttggggatgagctcttcagcgtgtttgaagaggacgcggccgccgct
gcttctgtcgccaagaagaacaaaacgggccccgccgagggtgccagaaggccaggaaaa
cgattggaagaaaaaccttcagtaccagcaatagtcaagccaaaaagggaacttgagatt
gatagtactgaaaatgtcattttggggaaaaaaccaaaattggaagatgttttatcagaa
gatgttaatctgacagatctgatgcctcaagtaaaggtgcagtctgtcgaaactgttgaa
ggttgtacacatgaggttgcgcttccagcaaatgaagaattcacaggtctgaagccaaga
actggaaaagctgcaaaagaatatccatttattcttgatgccttccagagagaagctatt
ctttgtgtagataataaccagtctgtgttagtgtcagctcacacatcagcgggcaaaact
gtttgtgctgagtatgcaattgccctggctttgagggaaaagcagcgtgtgatatttaca
agtccaattaaagctttaagtaatcagaagtaccgtgagatgtatgaagagtttcaggat
gttggtttgatgactggggatgtcaccattaatcctacagcttcttgtttggtaatgaca
actgagatcttgagaagtatgctttacagaggttctgaagttatgcgtgaagttgcttgg
gttatatttgatgaaattcactacatgagagatacagagcgtggtgtggtttgggaagag
actattattttgcttcctgataacgtacattacgtgttcctttctgcaactattccaaat
gctcgtcaatttgctgaatggatctgccatcttcacaaacagccttgccacgtgatttac
actgactatcgacccactccactgcagcattatatatttccagcaggaggagatggactc
catctggttgttgatgaaaatggagatttcagagaagataattttaatacagcaatgcaa
gtgcttagagatgcaggagatttagcaaaaggggatcagaaaggcaggaaaggaggaaca
aaaggtccttcaaatgtttttaagattgtgaagatgatcatggaaaggaatttccaacct
gtgattattttcagcttcagtaagaaagactgtgaagcctatgcacttcagatgacaaaa
ttagatttcaatacagatgaagaaaaaaaaatggttgaagaagtcttcaataatgcaatt
gactgtctctcagatgaagacaaaaagcttcctcaggttgaacacgtgcttccccttctg
aagcgaggaattggtattcatcatggtggtttgcttcctatcttaaaagaaaccatagaa
atacttttctcagagggactaataaaggccttatttgcaacagagactttcgctatggga
attaatatgccagccagaactgtgctgtttacaagtgccagtaaatttgatgggaaagat
ttccgatggatatcctcaggtgaatacattcaaatgtcaggccgcgcgggacgccgaggt
atggatgacagaggaatagtaattcttatggtggatgaaaaaatgagtccaacaattggc
aagcagcttttgaagggttcagctgatcccttaaatagtgcattccacctgacatacaac
atggtattgaacttacttcgagtagaagaaattaatcctgaatacatgttagaaaaatca
ttttatcaattccagcattacagaactattccagaaatagtggaaagagtcaacaatttg
gaagcacagtacaacaaaatcgtaattcccaatgaagaaaatgtggtgatatactacaga
atccgccagcagcttgcaaaactgggtaaagatattgaagagtatattcacaaaccaaag
tactgcttgccctttctacagccaggaagactggtaaaggtgaagaatgaaggtgatgac
tatggatggggagtggttgttaatttctctaagaaatcaaatgttaagccaaattctggt
gaactggacccattgtatgtagttgaagtgctcctgcactgcaccaaagacagtttgaaa
aattctgctacagagtctgcaaagccagccagacctgatgagagaggagagatgcaggtt
gttcctgttttggtgcatcttgtctcagctatcagcagtgtccgcctctacataccgaaa
gacctgaggccgattgataacaggcaaagtgtgttaaaatctgtacaagaagtacagaaa
cgatttcctgatggagtacccttactagaccctattgatgacatgggcatcaaagaccaa
gggttgaaaaaagtaatccaaaaaatagaggcatttgagcataggatgtattcacatcct
cttcacaatgatccaaatttggaaaccatatacaaactttgtgaaaaaaaagcacagatt
gctatggatattaaagtagcaaagcgagaattgaagaaagccagaactgtcctgcaaatg
gatgaactcaaatgccgcaagcgtgttttgagaagactgggctttgccacgtcttcagat
gttattgagatgaaaggacgggttgcttgtgaaatcagcagtgctgatgaactactcctg
acagaaatgatgttcaatggcctcttcaatgacttgtctgcagagcaggcaactgcacta
ctcagctgttttgtgtttcaagagaattccagtgaaatgccaaagttgactgagcagttg
gcaggaccacttcggcaaatgcaggagtgtgcaaaaagaatcgccaaggtgtcagcggaa
gcaaaactggaaactgatgaagaaaattacttgaattctttcaaacccaacctaatggat
gttgtgtatacatgggcaaatggagctaactttgcacacatctgcaaaatgactgatgtc
tttgaaggtagcataattcggtgcatgaggcgtctagaggaactgcttcggcagatgtgc
caggctgcaaaagccattgggaacacagaactggaaaataagtttgcagaggggattaca
aaaatcaagagagatattgtgtttgctgcaagcctttatctgtaa
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integrated database retrieval system
