Pseudopodoces humilis (Tibetan ground-tit): 102107873
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Entry
102107873 CDS
T02921
Symbol
TGFBRAP1
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
phi
Pseudopodoces humilis (Tibetan ground-tit)
Pathway
phi04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
phi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
102107873 (TGFBRAP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
phi04131
]
102107873 (TGFBRAP1)
Membrane trafficking [BR:
phi04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
102107873 (TGFBRAP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
102107873
NCBI-ProteinID:
XP_005516616
LinkDB
All DBs
Position
Unknown
AA seq
863 aa
AA seq
DB search
MSVKAFKLVSAVEREMLMGDKNYINIECIECCGKNLYIGTNDCFIYHFLLDEKVSTAGKI
TFAATKQLHKYLGLKKPVSELKAASALTRLLVLCDNTITLVNMINLEPVPTGARIKGAVT
FTLNENPVSGDPFCVEVCIISVKRRTIQMFMVFEDRVQIVKEVFTPEQPCAVAVDGYYLC
LALTTQYIILNYNTGVSQDLFPYCSDEKRPIVKRIGRQEFLLAGPGGLGMFATVDGISQR
APVHWSENVIGAALCFPYVVALDDEFITVHSMLDQQQKQTLPFKEGHILQDFEGKVIVAT
NKGVYILVPLPLEKQIQDLLASHRVEEALVLAKGARRNIPKEKFQVMYKRILQQAGFIQF
AQLQFLEAKELFRSGQLDVRELISLYPFLLPTSSSFIRSHPPLHEYADLNQLTQGDQEKM
TKCKRFLMSYLNEVRSTEVANGYKEDIDTALLKLYAEANHESLLDLLVSENFCLLTDSAA
WLEKHKKYFALGLLYHYNGQDATALQLWVKIVDGDIQDSTRSDLYEYIVDFLTFCSDQDL
VWKYFEWILQKNEEVGVQIFTKRPLEEQEKNNINPDDIISCLNKYPKARVKYLEHLVLER
KIQKEKYHTHLAVLYLEAILQLKSVTTDNCTETTELLLKLRSLLQKSDLYRIRFILDKIQ
GTDLHMESAILYGKLEEHEKALHILVHELKDFHAAEEYCMWNSENRDMQYRRRLFHMLLS
VYLTAGTSDCALVMAAVDLLNNHAMEFDAGLVLQVVPDSWSVQLLSPFLAGAVRQSIHTK
RMTQVALGLAQAENLIYKHEKVKQKGAPILLSDKKVCQVCQNPFCEPVFVRYPNGSMAHT
HCAANRHLNSNVTHHSPSSSNQT
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atgagcgttaaagctttcaagctcgtttctgctgttgagcgggagatgttaatgggagac
aaaaattacatcaacatagagtgcattgagtgttgtgggaaaaacctctatattggaacc
aatgactgctttatctatcactttctcttggatgaaaaggtatcaacagctggaaaaata
acttttgctgccaccaagcaactacacaaatacctgggtttgaagaagcctgtgagcgag
ttgaaagcagcctctgccctcaccagactgcttgtgctttgtgacaacacgataacacta
gtgaacatgatcaacttggaacctgtccccactggtgctaggatcaaaggagctgtgaca
ttcacactgaatgaaaaccctgtgagtggggatcctttctgcgttgaagtttgcattatc
tcagtcaagcgtcggaccattcaaatgttcatggtgtttgaagacagagtccagatagtg
aaggaagtgtttactccagaacaaccctgtgctgtggctgtagatggttactacttatgc
cttgcccttactacacagtatataattttgaattataatactggcgtctcccaggaccta
tttccttattgcagtgatgaaaaacggccaattgtgaaaagaataggcagacaagagttt
ctgttggctggccctggaggcctaggcatgtttgctactgtagatgggatttcacagcgg
gccccagtgcactggtcagagaatgtgattggggcagctttgtgctttccttacgtggtt
gctctggatgatgagttcattacggtgcacagcatgctggaccagcagcaaaagcaaacc
ctgccttttaaagaaggtcacattctacaggactttgaaggaaaggtgattgttgctact
aacaagggtgtgtatatcttggtgccactacctttggaaaaacagattcaggatcttcta
gctagccacagagtggaagaagcccttgttctagcaaaaggagctcgaaggaatattcca
aaagagaaatttcaggtaatgtacaaacgaatcctgcagcaagcaggttttatacagttt
gcacagcttcagttccttgaagcaaaagagctcttcagaagcggccagcttgatgtccgg
gagctgatctctctgtaccccttcctgttgcctacttcctcttcatttatccggtctcat
ccccctctgcacgagtacgcggacctgaaccagctgacccaaggggaccaggagaaaatg
acaaaatgcaaacgattcctcatgagttacttgaatgaagtccgtagcactgaggttgca
aatggctacaaggaggatattgacacagctttactcaaactgtatgcagaggcaaatcat
gaaagcctgctggatctcctagtttcagagaacttctgtcttttaacagatagtgctgcc
tggctggaaaaacacaaaaagtattttgcacttggtctcctgtatcactacaatggtcaa
gatgctacagcacttcagttatgggtgaaaatagttgatggagacattcaagattctaca
cgttcagatctctatgagtacatagttgacttccttacgttctgctcagaccaagaccta
gtgtggaagtactttgaatggattttacaaaaaaatgaagaggttggtgtacagattttc
actaaaaggcctttggaagaacaggagaaaaacaacattaatccagatgatatcatcagt
tgccttaacaaatatcctaaagcacgtgtcaaatatctagaacatctagtactggaaaga
aaaatacagaaagaaaagtaccatactcatctagctgtcttgtacttggaggcaatactt
cagctaaaatctgtgaccacagataattgtacagaaacaactgaactgctgttgaaactg
cgcagtctgcttcagaaatccgatctttatagaattcgctttattttagacaaaatccag
ggcacagaccttcatatggaaagtgcaattttatatgggaagctagaagaacatgagaag
gctttgcatatccttgtccatgagctgaaggacttccacgctgctgaagaatactgtatg
tggaactctgagaacagagacatgcagtacaggcggaggcttttccatatgctgctgtca
gtgtatttaactgcaggcacttcggattgtgcgcttgtcatggctgctgtggatctcttg
aataaccatgctatggaatttgatgcaggtctagttttgcaggtggtgcctgacagctgg
tcagtgcagctcctttccccattcctggctggagcagtgagacaaagcattcacacaaaa
agaatgactcaggtggcacttgggttagcacaagctgaaaacttaatctacaagcacgag
aaggttaaacaaaaaggagccccgattctcctttcagacaaaaaggtgtgtcaggtgtgc
caaaatcctttctgcgagcctgtctttgtgagatacccaaatgggagtatggcccacacg
cactgtgctgcaaacagacatctcaattccaatgtgactcatcactctcccagctccagc
aatcagacttga
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