Pseudopodoces humilis (Tibetan ground-tit): 102108134
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Entry
102108134 CDS
T02921
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
phi
Pseudopodoces humilis (Tibetan ground-tit)
Pathway
phi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102108134 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
phi03041
]
102108134 (SF3B1)
03036 Chromosome and associated proteins [BR:
phi03036
]
102108134 (SF3B1)
Spliceosome [BR:
phi03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
102108134 (SF3B1)
Complex B
102108134 (SF3B1)
Complex C
U2 SnRNP specific factors
102108134 (SF3B1)
Chromosome and associated proteins [BR:
phi03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
102108134 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
TALPID3
Motif
Other DBs
NCBI-GeneID:
102108134
NCBI-ProteinID:
XP_005519986
LinkDB
All DBs
Position
Unknown
AA seq
1301 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKPALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYPSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKK
HRRMMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGEL
KVVNGAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGS
ETPGATPGSKIWDPTPSHTPAGAATPGRDTPGHATPGHGGATSSARKNRWDETPKTERDT
PGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTP
AMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVP
IRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVD
ESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPT
LEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKA
AGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHT
GIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIES
FDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEE
MKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANK
VGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQ
TTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMK
TCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPI
LKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGY
IAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNV
QNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFG
CEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRD
VYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYIL
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagacccacgaagatatcgaagcacaaattcgagaaattcaagga
aaaaagcctgctcttgatgaagcacaaggagtaggccttgattccacaggatattatgat
caagaaatttatggtggcagtgacagcagatttgctggatatgtcacttctattgcagca
actgaattggaagatgatgatgatgactacccttccacaagtttgcttggccagaagaag
ccaggataccatgctccagtggcattgcttaatgacataccacaatctactgaacagtat
gatccttttgcagagcaccgtcctcaaaagattgcagatcgggaagatgagtacaaaaag
cacaggcggatgatgataatttcccctgagcgtcttgatccttttgcagatggagggaag
actccagaccctaaaatgaatgccagaacatacatggatgttatgcgtgaacagcattta
acaaaagaagagagggaaattaggcaacaactagctgaaaaagctaaagctggagagctc
aaagtcgtcaatggagctgcttctcagccaccttcaaaacgcaaacggcgttgggatcag
acagctgatcagactcctggtgctacacctaaaaaattgtccagctgggatcaagcagag
actcctggacacaccccatctctgcgatgggatgaaacaccaggccgtgcaaagggtagt
gaaactccaggtgccaccccaggctcaaaaatctgggatccgactcccagtcacacacca
gcaggagctgcaacgcccggccgggacacacctggtcacgcaacaccgggccatggaggt
gccacttccagtgcacggaaaaatcgatgggatgaaactcccaaaacagaaagagatact
ccgggccatggcagcggctgggctgagacacctcgtacagatagaggtggtgactccatt
ggtgagacaccaaccccaggagcgagcaaaaggaagtcacgctgggatgaaacacctgcc
agccagatgggcggcagcactcctgttctgacacctggcaaaacacccatcggtacccca
gctatgaacatggcaacccctaccccaggtcacatcatgagcatgactcctgaacagctg
caggcttggcgctgggagagggaaatcgatgaaagaaacagaccactttctgatgaggaa
ttggatgctatgtttcctgaaggatataaggttctcccacccccagctggttacgtgccc
attcgtactcctgctcggaagctcacagcgactccaacgcctctggggggtatgacagga
ttccacatgcagacagaggaccgcactatgaagagtgttaatgaccagccatctggcaac
ctgccattcctgaaaccagatgatatccagtactttgacaagcttctggttgatgttgat
gaatcgactctgagtcctgaggaacagaaggaaagaaaaataatgaaattgcttctgaaa
ataaagaatggcacacctcccatgcgaaaggctgcgttgcggcaaattacagataaagct
cgggaatttggagcagggccgttgttcaatcagattctgcctctgctgatgtcaccaaca
ctcgaagatcaggagcgtcacttgcttgtcaaagtcattgacagaattctttacaaattg
gatgacttggtccgaccatacgtacacaagatccttgtcgttattgagccactgctgatt
gatgaagactactatgctagagtggaaggcagagaaattatttccaacttggctaaggct
gcgggtttggcaacaatgatctccaccatgcgacctgatattgataacatggatgagtat
gtcagaaatacaacagctcgagcctttgccgttgttgcatctgctctgggcattccttct
ctgttgcccttcctaaaagctgtctgtaaaagtaaaaaatcctggcaggccagacacact
ggcatcaagattgtacagcagattgctattcttatgggttgtgctatcctgcctcatctc
aggagcttggttgaaattattgagcatgggctggtggatgagcagcagaaagttcgcacc
atcagtgctttggccattgctgctttggctgaggcggccactccctatggtattgagtca
tttgattctgtcctgaagcccttgtggaagggtattcgtcagcacagaggaaagggtttg
gctgcatttttgaaggctattggttacctgattccactcatggatgctgagtatgcaaac
tactacactagagaagtcatgctgattcttatcagagagttccagtctcctgatgaagag
atgaaaaaaattgtgttgaaggtggtaaagcaatgttgtggtacagacggtgttgaagca
aattacattaaaacagaaatcttgccacccttcttcaaacatttctggcagcacagaatg
gcactggacagaagaaattacagacagttggttgatacaactgtggagctggcaaataaa
gttggagcagcagaaattatttctaggattgtggatgatctgaaagatgaggctgagcag
tacagaaaaatggtcatggaaacaattgagaagataatgggaaatctgggggcagcagac
atcgatcataaactggaagagcagctcattgatggtattttgtacgcctttcaggaacag
acaacagaggattctgtgatgctgaatggttttggcacagtggttaatgctctaggcaaa
agagtgaaaccctacttgccacagatctgtggtacagttttgtggcgtttgaacaacaaa
tcagccaaagtcaggcagcaggccgctgacctgatctctcgtactgcagttgtcatgaag
acttgtcaagaggaaaaactgatgggacacttaggtgttgttttgtatgagtacctgggt
gaagaatatcctgaagtactgggcagcatactcggagcgcttaaggcaattgtgaatgtt
ataggtatgcataagatgacgccaccaatcaaagaccttctgccacggctaacacctatt
ttgaagaacagacatgagaaagtacaggaaaattgtattgatcttgttgggcgtattgca
gacagaggtgcagagtatgtttctgcaagagaatggatgaggatctgctttgaactgctt
gaattattaaaagctcacaagaaagctatcagaagagccacagtaaacacttttggttat
attgcaaaagctattggacctcacgatgtattggccacactgctaaacaacttgaaagta
caggaaagacagaacagagtatgtactacagtagcaattgctattgtggctgaaacatgc
tcacctttcacagtgctgcctgcactcatgaatgaatacagagttccagaactaaatgtc
cagaatggtgtgttaaaatctctttctttcctgtttgaatacattggagagatgggaaaa
gattacatttatgctgttacaccattgcttgaagatgctttaatggacagggatcttgta
cacagacaaacagccagtgctgtggtgcagcacatgtcccttggtgtttatgggttcggc
tgtgaagattctcttaatcacttgttaaattacgtgtggcccaatgtgtttgaaacctct
cctcacgtcatccaggcagttatgggggctctggagggcctcagagttgctattgggccc
tgcaggatgttacagtattgtttacagggtttgtttcaccctgccagaaaagtcagagat
gtttattggaagatctataattcaatctacatcggatcacaggatgctctgatagcacat
tatccaagaatctataatgatgagaagaacacctatattcgttacgaacttgattacatc
ttataa
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