Pseudopodoces humilis (Tibetan ground-tit): 102108757
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Entry
102108757 CDS
T02921
Symbol
XRN2
Name
(RefSeq) 5'-3' exoribonuclease 2 isoform X2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
phi
Pseudopodoces humilis (Tibetan ground-tit)
Pathway
phi03008
Ribosome biogenesis in eukaryotes
phi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
102108757 (XRN2)
09123 Folding, sorting and degradation
03018 RNA degradation
102108757 (XRN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phi03021
]
102108757 (XRN2)
03019 Messenger RNA biogenesis [BR:
phi03019
]
102108757 (XRN2)
03009 Ribosome biogenesis [BR:
phi03009
]
102108757 (XRN2)
03016 Transfer RNA biogenesis [BR:
phi03016
]
102108757 (XRN2)
Transcription machinery [BR:
phi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102108757 (XRN2)
Messenger RNA biogenesis [BR:
phi03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
102108757 (XRN2)
Ribosome biogenesis [BR:
phi03009
]
Eukaryotic type
Pre-60S particles
RNases
102108757 (XRN2)
Transfer RNA biogenesis [BR:
phi03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
102108757 (XRN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
102108757
NCBI-ProteinID:
XP_005525544
LinkDB
All DBs
Position
Unknown
AA seq
949 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVNCIEEKAKECNGVKVPIDTSKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRIFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKEGMEAAEEKQKIRQEILAKGGFLPPEEVKERFDSNCITPGTEFMDNLAKCLRYYIAD
RLNSDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPKPCALCNQMGHEVKDCQGLPREKQGKHDQFADTLPVSEQE
FIFIRLCVLREYLERELTMASLPFTFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKNVVHKTGGYLTESGFVNLQRVQMIMLAVGEVEDSIFKKRKDDDDNFKRRQKE
KRKRLKRDQPSFIPGGQFSPQALGNRSSPQAICNPRQAAFEMRMHDRQNSTTAASPNTSL
TPDGSPSLGAGIKRKAEDSDSEPEPEDNIRLWETGWKQRYYKNKFDVDASDEKFRRKVVQ
SYVEGLCWVLRYYYQGCASWNWYYPFHYAPFASDFEGIADMPSDFEKGSKPFKPLEQLMG
VFPAASGNFLPPTWRKLMTDPESSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRA
ALEEVYPDLTPEESRRNSLGGDVLFVGKHHPLCDFIVEQYKSKSGEAVDIPPELCHGIQG
KLTLNDNAVLPDQVVQSPVPMLRDLTQNSAVSISFKDPQFAEDFVFKATVLPGAKKPAPV
LKPGDWEKTNNDGRPWRPQLGFNRDRKPVHLDQSAFRTLGHTMPRDRAMPGMYPNAVPLG
AYGSPYARPLMGSQQQIPKLLSNLRPQESWRGPTPLFQQTPQRTAGATPLLAWNRMLQSP
NQFQPAQYQGLGPMGYPQRPEDRMDRGRQAYGPGRPYPLPPPAGRYSWN
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atgggggtcccggccttcttccgctggctcagccgcaagtacccctccatcatcgtcaac
tgcatcgaggagaaggccaaggagtgcaacggtgtcaaggtgcccattgacaccagcaag
cccaaccccaacgaggtggagttcgacaacctctacctggacatgaacggcatcattcac
ccctgcacacacccagaggacaagccggcgcccaaaaacgaggatgagatgatggtggcg
atttttgagtatatcgacaggatcttcaacattgtgaggccgaggaggctcctttacatg
gccatagatggagtggctccgcgtgccaaaatgaatcaacagcgctccaggagattcaga
gcctccaaggagggaatggaagctgccgaggagaagcaaaaaatccgacaagaaattctg
gccaaaggtggctttctgcctccggaggaggtgaaggagaggtttgacagcaactgtatc
accccgggaaccgagtttatggacaatcttgctaaatgcctccgctattacatcgctgac
cgcttgaacagcgacccgggctggaagaacctgacggttattttgtcagatgccagtgct
cctggtgaaggggagcataaaatcatggattacatcaggagacaaagagctcagccaaac
cacgacccaaacactcaccattgtctgtgtggggctgatgctgatctgatcatgcttggc
ttagctacacacgaaccaaacttcaccatcattcgggaagagttcaaaccaaacaaaccc
aagccatgtgctctctgtaaccagatggggcatgaggttaaggattgccaaggtctgccc
agagagaaacaaggaaagcacgatcagtttgccgacacgctgccggtctcggagcaggag
ttcatcttcatccgcctgtgtgtcctgcgagagtacctggagagagagctcaccatggcc
agcctgcctttcactttcgattttgaaaggagtgtcgatgactgggtcttcatgtgcttc
tttgtggggaatgacttcctcccccatctgccatctctggagatcagggagggagcgatc
gatcgcttggttaacatctataaaaacgtggtgcacaaaaccgggggctacctgactgag
agtggctttgtgaacctgcagcgggtccagatgatcatgctggctgtcggggaagtcgaa
gacagtattttcaaaaagaggaaagatgacgatgataactttaaaagacggcaaaaggag
aaaaggaagagattgaagagggatcagccttcctttattcctggtggccagttctcccct
caagccctgggaaatcgatccagccctcaggcaatctgtaaccctcgacaagctgccttt
gagatgaggatgcacgacaggcagaactctacaacggcagcgtctccgaacaccagcctg
actcctgatggcagcccgtccctgggagcaggaattaagaggaaagctgaggacagtgac
agtgaacctgagccagaggataatatcaggctgtgggaaactggctggaagcagcgctac
tataaaaacaaattcgacgtggacgcgtcggacgagaaattccgtcgcaaggttgtgcag
tcctacgtggaaggcctttgctgggttctcagatattattaccagggctgtgcatcctgg
aactggtattaccctttccactacgctccctttgcctcggacttcgagggcattgcggac
atgccttcggactttgagaagggctccaaaccgttcaagcctctggaacagctgatgggg
gtgttcccggccgccagtgggaacttcctgccgccgacctggaggaagctgatgacagac
ccggaatcaagcatcattgacttctaccctgaagattttgctattgatttgaatgggaag
aagtatgcttggcaaggtgtggccttgttgcccttcgtggatgagcgacgcctcagagct
gccctggaggaagtgtaccctgacctcactcccgaagagagcaggaggaacagcctgggc
ggtgacgttctctttgtggggaagcaccatcccctgtgtgacttcatcgtggagcagtac
aagagcaagagcggcgaggcagtggacatcccgccggagctgtgccacggcatccaggga
aagctcaccctgaacgacaacgccgtcctcccagaccaggtggtgcagtctcctgttccc
atgctgcgggacctgacacagaactctgcagtcagcatctcattcaaagacccacaattt
gctgaagactttgttttcaaggctacagtgttacctggggcaaagaaacctgctccagtt
ctgaagccaggagactgggaaaaaaccaacaatgatggcaggccttggagaccacagctg
ggctttaacagggacaggaaaccggtgcatttggaccagtcagcgttcagaaccttgggg
cacacgatgccgagggacagggccatgcccgggatgtaccccaacgccgtgccgctcgga
gcctacggcagcccctacgccaggcccctcatgggcagccagcagcagatccccaaactg
ctgtcaaatctgcggccccaggagtcctggcgaggtcccacgcccttgttccagcagaca
ccacaaagaaccgccggagccacccctctgctggcctggaaccgcatgctgcaatcccca
aaccagttccagccggcccagtaccaggggctggggcccatgggatacccgcagagaccc
gaggaccgcatggacaggggcagacaggcgtacggccccgggaggccctacccgctccca
cctcccgcaggaaggtacagctggaattag
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integrated database retrieval system
