KEGG   Pseudopodoces humilis (Tibetan ground-tit): 102109325
Entry
102109325         CDS       T02921                                 
Symbol
ERCC8
Name
(RefSeq) DNA excision repair protein ERCC-8
  KO
K10570  DNA excision repair protein ERCC-8
Organism
phi  Pseudopodoces humilis (Tibetan ground-tit)
Pathway
phi03420  Nucleotide excision repair
phi04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:phi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    102109325 (ERCC8)
  09124 Replication and repair
   03420 Nucleotide excision repair
    102109325 (ERCC8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:phi04121]
    102109325 (ERCC8)
   03400 DNA repair and recombination proteins [BR:phi03400]
    102109325 (ERCC8)
Ubiquitin system [BR:phi04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     102109325 (ERCC8)
DNA repair and recombination proteins [BR:phi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      102109325 (ERCC8)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_TEP1_2nd Beta-prop_EML_2 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_RIG_2nd Beta-prop_EIPR1 WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd Beta-prop_EML ANAPC4_WD40 WD_LRWD1 Beta-prop_TEP1_C NBCH_WD40 Beta-prop_IFT122_1st WD40_RFWD3 WDR90_beta-prop_4th WD40_MABP1-WDR62_1st Beta-prop_RIG_1st Beta-prop_WDR19_1st Beta-prop_LRRK2 Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_Nup120_160 Beta-prop_WDR75_2nd Beta-prop_WDR35_TULP_N Beta-prop_HPS5 Beta-prop_SCAP Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 102109325
NCBI-ProteinID: XP_005531896
LinkDB
Position
Unknown
AA seq 398 aa
MLGLMAARQAGLDDPARLRRAERTRRVLSLELNKDRDVERVHGSGINTLDIEPVEGRYML
SGGSDGVIVLYDLENLSRKPSYTCKALFSVGRSHPDVHKFSVETVQWYPHDTGMFTSSSF
DKTLKIWDTNTLQPADIFHFEETVYSHHMSPVATKHCLIAVGTKSPKVQLCDLKSGSSSH
ILQGHRQEVLAVSWSPRHEYILATGSADGRVKLWDVRRASGCLSTLDQHNGEKSKASSEA
ANTAHNGRVNGLCYTNDGLHLLTLGTDDRMRLWNSSTGENTLVNYGKVCNESRKGLKFAI
SCGCNPEFAFVPHGSTIAVYTVFTGELITVLRGHYSTVNCCVFQPHFQELYSGSKDCNIL
AWIPAPREPVPDDISEKSLPQQHLNPAYEDAWSSSDEG
NT seq 1197 nt   +upstreamnt  +downstreamnt
atgttggggctcatggctgctcgccaggccgggctggacgaccccgcgcggctgcgccgg
gctgagcgcacccggagggttctaagtttggagttaaataaagatagagatgtggaaaga
gtacatggaagtggtatcaacacccttgatattgagcctgttgagggaagatacatgtta
tctggtggatcggatggtgttattgtactttatgaccttgaaaacttgagcaggaaacca
agttacacatgtaaagcacttttttctgttggaaggagtcatcctgatgtacataaattc
agtgtggagacagtccagtggtatcctcatgacactggcatgtttacgtcgagctcattt
gacaaaaccttgaaaatatgggatacaaatactttacaacctgcagatatatttcacttt
gaggaaacagtctatagtcatcatatgtctccagttgctacaaagcattgtttaatagca
gttggtaccaaaagccccaaagtacagctctgtgacttgaagtctggatccagttctcac
attctgcagggtcacaggcaagaagtattggcagtgtcttggtccccacgtcatgaatat
attttggcaacaggaagtgctgatggtagagtgaaattatgggatgtgaggagagcttct
ggatgtctgagtacacttgatcagcacaatggggaaaagtccaaagcatcttctgaggca
gcaaacactgctcacaatgggagagttaatggtttatgctatacaaatgatggacttcac
ttgctaacccttggtacagatgatcggatgcgtctctggaacagctccactggagaaaat
accttagtgaactatgggaaagtctgtaatgaaagtaggaaaggactcaaatttgccatc
tcttgtggctgtaatccagagtttgcctttgttccgcatggaagtaccattgctgtttat
acagttttcacaggagaactgataactgtgcttagagggcattatagtactgtcaactgc
tgtgtatttcaacctcattttcaggaactttatagtggcagcaaagactgcaatatcctt
gcatggatacctgctccacgagagccagttcctgatgatatttctgaaaagtctctgcct
caacaacatttaaatccagcatatgaagacgcatggagcagcagtgatgaaggctaa

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