Pseudopodoces humilis (Tibetan ground-tit): 102109729
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Entry
102109729 CDS
T02921
Symbol
XRN1
Name
(RefSeq) 5'-3' exoribonuclease 1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
phi
Pseudopodoces humilis (Tibetan ground-tit)
Pathway
phi03008
Ribosome biogenesis in eukaryotes
phi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
102109729 (XRN1)
09123 Folding, sorting and degradation
03018 RNA degradation
102109729 (XRN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phi03019
]
102109729 (XRN1)
03009 Ribosome biogenesis [BR:
phi03009
]
102109729 (XRN1)
03016 Transfer RNA biogenesis [BR:
phi03016
]
102109729 (XRN1)
03036 Chromosome and associated proteins [BR:
phi03036
]
102109729 (XRN1)
Messenger RNA biogenesis [BR:
phi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
102109729 (XRN1)
mRNA degradation factors
5'-3' decay
5' exonucleases
102109729 (XRN1)
Ribosome biogenesis [BR:
phi03009
]
Eukaryotic type
Pre-60S particles
RNases
102109729 (XRN1)
Transfer RNA biogenesis [BR:
phi03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
102109729 (XRN1)
Chromosome and associated proteins [BR:
phi03036
]
Eukaryotic type
Gene silencing
piRNA pathway
102109729 (XRN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
102109729
NCBI-ProteinID:
XP_014111648
LinkDB
All DBs
Position
Unknown
AA seq
1768 aa
AA seq
DB search
MGVPKFYRWISERYPCLSQVLKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISEDKI
FANIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGE
TLPTEARFDSNCITPGTEFMARLNEHLKYFVNMKISTDKSWQGITVYLSGHETPGEGEHK
IMEFIRSEKAKPHHDPNTRHCLYGLDADLIMLGLTSHEAHFALLREEVRFGGKKAQRVCA
PEETTFHLLHLSLMREYIDYEFSPVKDKISFEYDIERIIDDWILMGFLVGNDFIPHLPHL
HINHDALPLLYRTYMAILPELGGYINENGYLNLERFEKYLTRLSDFDREHFSEVFVDLKW
FESKVGNKYLNEAAGIAAEEARRNKQKKQKAQENSISLAALEKNEGEVTPKNTLEDEPED
DDLFETEFRQYKRTYYMTKMGVEVVSDAFLADQAECYVQAIQWILHYYYHGVQSWSWYYP
YHYAPYLSDIHNISELKIKFELGKPFMPFEQLLAVLPAASKDLLPKCYQHLMTSQDSPII
EYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLQAMESCNKGLKEEEKQRNTHSACLMYW
YDKDAEFQYLSPWPEKFPVIERCHTRYKAIPLDAWYVEITHNKITKINKSALYFCGFPTL
KHIKHKFYLKKSGVQVFQQSSHGENMMLEIIVDGNSKDQMVENVASSVLGKRVFVNWPHL
EEARVVAVSDGETKFYLEEPHGTQKLYMGNAVPPTKVAYVGEKEQSMWVKEIQGISEQYQ
RRKGIIIHETSVVVYAQLLTGNRYQLNQNGEVYLEKQWSKQVLPFVYQTVVKDIKAFDSR
FSNIKTLDDLFPPGSTAFMLGSPYYGCMGEVHDSHDVIPEGRIRVVFNIPCEPQLDTLIQ
NQHKYSVKYNPAYILASRLGVSGYLVSRFTGSIFIGRGSKKNPHGDHKANVGLNLKFNKK
NEEVPGYTKKVGNEWMYSSAVEQLLAEYLERVPELFNYVAKNSQEDICYEDDIWPGEDEN
GAEKVQEIVAWLKAHPVSALSRSSCDLQILDAAIVEKIEEEIEKCKQRKSNKKVRVTVKP
HLLYRPLEQQKGVVPDRDAEYRLFDRVVNVRENFSVPVGLRGTIIGIKGATRETDVLFEV
LFDEEFLGGLTIRCSPARGYRLPSSALINLSHGSRSEMGNQKLMAIVKPQPAVNNYNSYA
SDLSSVCSQKVHLGGLNHSPRSLFVPTQQLNGRQHYNLRAENQGNSNSPQKGSFLSGNQK
NKAQSKQDDEFCSIWQSLQSSGKSHHVQQNMHEKGAVLPQEIKLGTGHQFYKPGFNDGSF
KCQQRKQEPYKKFKEDSKVTRGESQPHNKMSNQQNFTGANKYNVKLLKRNGSPNMPLIQK
AAADGPCTGGKKDNELESLLASLKISKENEVQTYSKEARATNEEHLSPQSFAMKGTQMLK
EILKIDGSDLQTKNEVKSQVNDVPAPSSRQDCHGAALQFRPTKKMAAYMNKHSPGGPQNT
PAIETGGHPFTCPQPALSTVSELSRICSLLGMAQPDFSFLKTPQTMTVCHIKLSNGLLVH
GPQCHSEAEAKEKAALFALQRLGSIGVNFASPPPPPVFPNYQPLGVPVPPGSIPPVFAQP
PANMMPPSSHMFGPVSWGTPVPKHYYPGSYPGNVSLSGTIPVGSHNQFIPLQVTKKRAAS
KKNFELKEFQSSPQAAPLKNEQPMSSDHIQQDSSSAPLKSPQAAQSTVSFQDNVATPGVP
HNKSTPNTSSKRKPRKLAVNFGAPKSSE
NT seq
5307 nt
NT seq
+upstream
nt +downstream
nt
atgggggtccccaagttctaccggtggatctcggagcgatacccctgcctcagccaggtg
ctgaaggagcatcagattccagaatttgacaacttatacctggacatgaatggcataata
catcagtgttcccatccaaatgatgacgatgtccacttcagaatctcagaagataagatt
tttgccaatatttttcattatttagaagtactgtttcgcattattaaaccaagaaaggtt
ttcttcatggcagttgatggagtagctccaagagcaaaaatgaatcagcagcgtgggaga
cgttttagatcagcaaaagaggcagaggataaaataaaaaaggcattggaaaagggagaa
actctccctacagaagccagatttgactccaactgtattacaccaggaactgaattcatg
gccagattgaatgagcatcttaaatattttgtaaatatgaagatttccacagacaaatcc
tggcaaggaataacagtctacttatcaggccatgagactccaggggaaggtgagcataaa
attatggagttcatcagatcagaaaaagcaaagccccatcatgatccaaacacaagacac
tgtctctatggcttagatgctgacttgataatgctgggattaacaagtcatgaagcacac
tttgcgctcttaagagaagaagtcagatttggtggtaaaaaggctcaaagagtatgtgca
ccagaggaaaccacatttcatttactgcacttatcactgatgagagaatatatcgattat
gaattttccccagtaaaagacaagatttcttttgaatatgatattgaaaggataatagat
gattggatcttaatgggtttccttgtaggaaatgatttcattcctcatctacctcattta
cacattaatcatgatgcactgccgctactttatagaacatacatggctatcttgccagaa
ctgggaggttacatcaatgagaatgggtatctgaatttagaacgttttgagaaatatctc
acaagattgtcagattttgatcgtgaacacttcagtgaagtctttgttgacctaaagtgg
tttgaaagtaaagtaggcaataaatacctcaatgaggcagctgggattgcagcagaggaa
gccagaagaaataaacaaaagaaacaaaaggctcaggaaaattctatatctttggctgct
ttagaaaaaaatgaaggcgaagtgacccctaaaaacacattggaagatgagccagaagat
gatgatctgtttgaaactgagtttaggcaatacaaaagaacttactacatgactaaaatg
ggtgtagaagtagtgtctgatgccttcttggctgatcaagctgaatgttatgtccaggca
attcagtggattttgcattattactaccatggagttcagtcatggagctggtattaccct
tatcattatgcaccttacctgtcagatattcacaacatcagtgaactcaaaatcaaattt
gaacttggaaaacctttcatgccatttgaacagcttcttgctgtacttccagcagctagc
aaagatctgctacctaaatgttaccagcatttgatgactagtcaagactctcctattata
gaatattatccacctgattttaaaactgacctaaacggtaaacagcaggaatgggaagct
gtagtattaatcccgtttattgatgagaaacgactgctgcaggccatggaatcctgtaat
aagggcctaaaagaagaggagaaacaaagaaacactcacagtgcttgcttaatgtactgg
tatgacaaagatgctgagttccagtacctgtcaccatggccagagaaattccctgtgata
gaacgatgtcacacgaggtataaagcaatacctttggatgcttggtatgtggaaataacc
cacaataagataactaaaatcaacaagagtgcattatatttttgtggatttcctacttta
aagcacattaaacataagttctatcttaaaaaaagtggtgtgcaagtgtttcagcaaagc
agccatggagagaacatgatgttggaaatcatagttgatgggaactcaaaagaccagatg
gtagaaaacgttgccagttctgtacttggaaagcgagtttttgttaactggccccacctt
gaagaagccagagttgttgcagtgtcagatggagaaactaagttttatttggaagaacca
catggcacacagaagctttacatgggaaatgcagtgcccccaactaaagtggcttatgtt
ggagaaaaggagcaaagcatgtgggtaaaagaaattcaaggcatttcagagcagtaccag
agaaggaaaggaataattattcatgaaacatcagtagttgtatatgctcagttactcact
ggtaatagatatcaactaaaccaaaatggagaagtttatttggagaagcagtggtctaaa
caagttcttccttttgtttaccaaacagttgtcaaggatatcaaagcctttgactctcgt
ttttcaaacatcaaaactttggatgatttgtttcctcctggaagtacagccttcatgctg
ggatctccttactatggctgcatgggagaagttcacgattcacacgatgtgatcccagaa
ggtagaatccgggtagtttttaatattccatgtgaaccccagcttgatactttaatacag
aaccagcataaatattcagtgaaatacaatcctgcatatattttggccagccgtcttgga
gtaagtggatatcttgtctccagatttacagggagtatctttattggaagaggatcaaag
aagaatcctcatggtgatcacaaagcaaatgtggggctaaacctgaagttcaataagaaa
aatgaagaagttcctggctatactaagaaagttggaaacgaatggatgtattcttctgca
gtagagcaactacttgctgagtatttagaaagggtgcctgaactatttaattatgtagcc
aagaacagccaggaagatatttgctacgaagatgacatttggcctggagaggatgaaaat
ggagctgagaaagtgcaagaaattgttgcctggttaaaagcacatcccgtgtctgctttg
tctcgctcatcttgtgacttgcaaattttggatgcagctattgttgagaaaattgaagaa
gaaatagagaaatgcaagcagaggaaaagcaacaagaaggtgcgagtaactgtgaaaccc
catttgctgtacagaccattagaacagcagaagggggttgttccagatcgagatgcagag
tacaggctgtttgaccgtgttgtcaatgtaagagagaacttttctgttcctgttggtcta
cgaggcaccattattggaattaaaggagctactagagaaacagatgtgctctttgaagtt
ttatttgatgaagaattccttggaggcctcactataaggtgctcacctgccagaggttat
cgtctgccctcaagtgccttaattaacctgtctcatggcagtcggtcagaaatgggaaat
caaaagctgatggccatagttaaacctcagccagcagtgaataactacaactcatatgca
tctgatctgtcatctgtatgctcacaaaaagtgcacctgggaggcctcaaccattctcct
cgctccctttttgttcctactcaacaactgaatggaagacagcattacaatctcagggct
gaaaatcagggcaactcaaactcaccccagaaaggatcatttctgagtggcaatcagaaa
aataaagcacagagtaagcaagatgatgaattctgcagcatatggcagtcattgcagagt
tctgggaagtctcatcacgttcaacaaaacatgcatgagaagggtgcagttctacctcag
gaaatcaagctgggaactggccatcagttttataagccaggcttcaatgacggcagcttt
aaatgccagcaaagaaaacaggagccttataaaaaatttaaagaagattccaaagttaca
agaggtgaaagtcaaccacataataaaatgtcaaaccaacagaatttcacaggtgcgaat
aagtacaatgtcaaacttttgaagaggaatggaagtcccaacatgcctttaattcagaag
gctgcagctgatggtccctgcacaggtggaaagaaggacaatgaactggaaagccttcta
gcttctttgaaaatttccaaagaaaatgaagtgcagacttattccaaggaagcgagagct
acaaacgaggaacatctgtcaccacagtcatttgctatgaaaggaacacagatgctcaaa
gagattttgaagatagatggctcagatctgcaaacaaagaatgaagtgaaatcacaagtt
aatgatgttcctgctccctctagtagacaggattgccatggagctgctttgcaattcaga
ccaacaaaaaaaatggctgcttatatgaacaagcatagccctggaggcccccagaacaca
ccagcgatagaaactggaggtcaccctttcacttgtccgcagcctgcactgtctactgtt
tctgagctttctcgtatttgttctcttcttggaatggcgcaaccagatttctctttccta
aaaacaccacagaccatgaccgtttgccatataaagctgtcaaatggattattggttcac
ggaccacagtgtcattccgaagctgaagcaaaggagaaagctgccctttttgctttacag
cgcttgggttctataggagtaaactttgcttcgcctccacctccaccagtgtttccaaat
taccaaccactaggagttcctgtaccacctgggtcaattcctccagtatttgcacagccc
cctgctaatatgatgcctccgtcatctcacatgtttggtccagtgtcctggggaactcca
gtgcctaagcattattatcctggctcctatccaggaaatgtgtctctttcaggaactata
ccagttggttctcacaaccagtttatacctctgcaggtaactaaaaaaagggctgctagc
aagaaaaactttgaactcaaggagtttcagagttcccctcaagctgcaccactaaagaat
gaacagccaatgtcttctgaccacattcagcaagatagttcttcagctcctttaaaatct
cctcaagctgctcaatccactgtttcatttcaagacaatgtggctactccaggtgttcct
cataacaaatcaacaccaaacacttccagcaagcgaaagccaagaaaactggctgtcaat
tttggcgcaccaaaatcttcagaatag
DBGET
integrated database retrieval system
