Pseudopodoces humilis (Tibetan ground-tit): 102110751
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Entry
102110751 CDS
T02921
Symbol
SCAF8
Name
(RefSeq) protein SCAF8
KO
K13191
RNA-binding protein 16
Organism
phi
Pseudopodoces humilis (Tibetan ground-tit)
Brite
KEGG Orthology (KO) [BR:
phi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phi03021
]
102110751 (SCAF8)
03041 Spliceosome [BR:
phi03041
]
102110751 (SCAF8)
Transcription machinery [BR:
phi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102110751 (SCAF8)
Spliceosome [BR:
phi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
102110751 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
102110751
NCBI-ProteinID:
XP_005518474
LinkDB
All DBs
Position
Unknown
AA seq
1358 aa
AA seq
DB search
MEAVKAFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKN
NVFKSEIIQPLLDMAAGIPPPVVTPVLPSTTAAMSNNTPGTPVTPVTPANVAQSLPDPWV
SQIANTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPSLLQALDAGLVVQLQALTAQ
LTAAAAAANTLNPLEQSVSFNKKLMDRFDFGEESEQNEEPKKETPSSQLPLVPESVNNSL
FHQLAEQLQQQNLEHLRQQLLEQQQPQKVSPEENQEGNFGSEHSASPSQGSSQQQFLEVE
ANVDDTMDIQQQDMDIDEGQDIAEEIFEQEEKKSAVHSRSRTRSRSRSRSPRKRRSRSRS
GSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLW
VGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAYRALQKLSSGSYKIG
SKIIKIAWALNKGVKTEYKQFWDVDLGVSYIPWEKVKLDDLEGFAEGGMIDQETVNTEWE
TARSSEAAKENTQTTQSATVDKSTVITTQTEAYTQPVTMLQIPVAPAVPAVSLVPPAFPV
TMSVPPPGYGPIPPPPFLRASFNPSQPPPGYMPPPVPPVVPPPVVPPPVVPPVVPTPLVQ
PPLPIAQETMKDVPFTGLVLPVGTVTSNLATPTLSAGSVFNPLPINKPESDDKVSHLTDL
QISSSENSRSVQSDVSSSSGLVGGVQPPSVSSNSGHTGEGPPPTVSSSSGLAGGVQPPSV
SSSSGHVGGVQPPTVSSNSGLAGGMQLPAVSSSSSLAGGIQPTNASSSSGLMAGVPPPNV
SSSSGLLAGVHPPSVSSSPGLLTGMQPPSVSSSSGVLAGVQPPSVSSNSGLLIMPPPNVS
TSSGLMGVPPPNISSNSGLLAMQHPAAVPNMPHLNISNQRMPGMPVIDIRPGLMPHSPGP
RFPLMQPGMPPQRTIPPPAILDPSLHPPPPRGPFAPGDIFNQTERPFGTPGRQNIDNISN
PEKRLPLGGDNIQQEGDRDYRFPPVENRDNLNRPSPVDVRDSVGRPPVDPREGIGRPPVD
GREHFARPHIDMRENFGRPGIDNLGRREHFGFNSDKHWGQRGDYDEREHHAFPIYGGPKG
FHEDRERFRHVNYRFDSRSGGPSWNRGFEQDAHRDFDDRRRPWERQRDRDDRDFNFCREI
NGNRFGRDRMSNNWIPPPHPRVFEYFDGATSQRKVDNMPQVNGENTETESQPPTAQVQGD
PELYEKLTSSVEINKEKSDTEADIESEPVVESTETEGT
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgtgaaagcctttaacagcgagttgtactcgctaaatgattataagccaccc
atttctaaagctaaaatgacacagatcaccaaggcagcaatcaaggctataaagttctac
aagcatgttgttcagagtgttgagaaattcattcaaaagtgcaaaccagagtacaaggtt
cctggtctgtatgtcattgactccattgtgagacagtcccggcatcagtttggacaagaa
aaggatgtatttgcgccaagattcagcaataacatcatcagcactttccagaacttgtac
cgttgtcctggtgatgacaagagcaaaattgttagagtgcttaatttgtggcagaagaat
aatgttttcaagagtgaaattattcagcctctcttggatatggcagcaggaattcctcct
cccgttgtgacccctgtcttgcccagcactacagctgctatgagcaacaatacaccaggt
acacctgtgactccagttaccccagccaatgtggcacagagtttacctgatccttgggta
tctcagattgctaacacagacacccttgctgctgttgcacagattttacagagtcctcaa
ggccaacagcttcagcagttgatacagacgctgcagatacagcagcagaaacctcagcct
tcgctacttcaagccctggatgccggtctcgtcgttcagttacaggccctcacagcacaa
ctcacagctgcagcagctgctgctaacacacttaatccactggaacagagtgtctctttt
aataagaagctgatggacaggtttgactttggggaagaatctgaacaaaatgaagagcct
aaaaaggaaactccctcttcccaattgccattagtaccagaatctgtgaacaactcactt
tttcaccaactagctgaacagctgcagcaacaaaatttagaacatctcagacaacagctt
ctggagcagcagcagcctcaaaaggtgagccctgaggagaatcaagaaggaaattttggt
tcagagcactctgcgtcaccatcacaagggagtagtcaacagcagtttttagaagtagaa
gcaaatgtagatgatacaatggatattcaacaacaggacatggatatagatgaaggtcag
gatattgctgaagagatttttgaacaagaagaaaagaaatcagctgttcattcaagatca
agaactcgttcaagatctcgttcaaggtcaccaagaaaacgaaggtctagatctcggtct
ggttctcgtaagcggaaacacagaaagcgttcacgctcaagatcaagagaaaggaagagg
aagtcatctcggtcatactccagtgaaagaagggctagggaaagggaaaaagaacgtcag
aaaaagggattgcctcctatacggtcaaaaacgctaagcgtttgcagtactactctttgg
gtaggtcaagtagacaagaaggctactcagcaagatttaacaaacttgtttgaagaattt
ggacagatagagtcaattaatatgattcccccaagaggatgtgcttatgtctgtatggta
catagacaagatgcatatcgtgctcttcagaaacttagttctggttcatataaaattgga
tctaaaattattaagattgcttgggctttgaataaaggtgtgaaaacagaatacaagcaa
ttctgggatgtggacctgggggtttcctatattccatgggagaaagtgaaattggatgat
ttggaaggctttgctgaaggtggcatgattgaccaggaaacagtaaatacagagtgggaa
acagccagaagctcagaagctgctaaagaaaatactcaaacgacgcagagtgctacagtt
gataagagtaccgttattacaacacagactgaagcttacacacaaccagtcactatgctg
cagattccagtagctccagctgtgcctgctgttagcttggttccacctgcgtttcctgtc
acaatgtctgtccctcctcctggttatggcccaattcctccaccacccttcttgagagca
agtttcaacccttcacagccacctccaggttatatgcctcctccagttccacctgttgtc
ccaccacctgttgtcccaccacctgttgtcccaccagttgttccaacacctttagtacag
cctccattaccaattgcacaagagacgatgaaggatgttccttttaccggccttgttcta
ccagttggcacagttactagcaatctagctactccaacattatctgctggaagtgttttt
aatcccctgccaatcaacaaacctgaatcagatgacaaagtatcacatcttacagacctt
cagatttcttccagtgaaaacagtagatctgtgcaaagtgatgtctcgagtagctctgga
cttgttggaggagtgcagccacccagtgtctcaagcaattctgggcatactggagaaggg
ccaccacccactgtctcaagtagctctggacttgcagggggagtacagccacccagtgtt
tcaagcagctctggacatgtaggaggagtgcaaccaccaactgtttccagcaattctggt
cttgcaggaggaatgcagctacctgctgtctccagtagctcttctcttgctggcgggatt
cagccaactaatgcctcaagtagctctggacttatggctggagtgccaccaccaaatgtc
tcaagtagctcagggcttctagctggagtccatccacccagtgtctcaagcagccctggc
cttctgacaggaatgcagccacccagtgtgtccagcagctcaggagttctggcaggagta
cagccacccagtgtttcaagcaactctgggcttctcataatgccaccacccaatgtctca
actagttctggacttatgggagtgccaccaccaaacatttcaagtaattctggacttctg
gcaatgcagcatccagctgcagttccaaacatgcctcatttaaatatcagtaatcaaaga
atgccaggaatgcctgttatagatatccgtccaggcctaatgccccattcccctggacca
aggtttccattaatgcagccaggaatgccaccacagcgtactattcctcctcccgcaatc
cttgatccatctcttcacccaccaccacctcgtggtccttttgctccaggagatattttt
aatcaaacagaaagaccttttggaacaccaggaagacaaaatattgataacatttctaat
ccagagaaaaggctgccacttggaggtgataacattcaacaggagggagacagagattat
cgctttcctccagtggaaaaccgagataatcttaacagaccatctccagtggatgtcaga
gattctgttgggcgaccaccggttgatccaagagagggtataggaaggcctccagtagat
ggaagagaacactttgcaagaccacatatagacatgagagaaaattttggaagaccaggt
atagataaccttggccgaagagagcattttggtttcaattcagacaagcactggggacag
agaggagattatgacgaaagagagcaccatgccttccctatttatggtggccctaaaggt
ttccatgaagacagagagaggtttcgacatgtaaactataggtttgatagtaggagtggt
ggtcccagttggaatagaggatttgaacaagatgctcacagagattttgatgaccgcaga
agaccctgggaaagacagagggatagggatgacagagattttaatttttgcagagaaatt
aatggaaacaggtttggaagagacagaatgtcaaacaactggatcccgcctccacatcca
cgggtttttgaatattttgatggggccacttctcaacgcaaagttgataatatgccccag
gtaaatggtgaaaatacagagacagaaagtcagcctccaactgcacaggtgcagggtgat
ccagaactttatgaaaaactgacatcttccgtcgagataaacaaagagaagagtgacaca
gaagctgatatagagagtgaaccagtggtagaaagcacagaaactgaggggacataa
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