Pseudopodoces humilis (Tibetan ground-tit): 102111968
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Entry
102111968 CDS
T02921
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain
KO
K19719
collagen type II alpha
Organism
phi
Pseudopodoces humilis (Tibetan ground-tit)
Pathway
phi04510
Focal adhesion
phi04512
ECM-receptor interaction
phi04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
phi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102111968 (COL2A1)
04518 Integrin signaling
102111968 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102111968 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
phi00536
]
102111968 (COL2A1)
Glycosaminoglycan binding proteins [BR:
phi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102111968 (COL2A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
102111968
NCBI-ProteinID:
XP_005533325
LinkDB
All DBs
Position
32:40265..57838
Genome browser
AA seq
1506 aa
AA seq
DB search
MPGHRPAPGGRRTESPATGAVPGAAPRPGLLLLLLLCLAAAAAAQDRDLPEAGSCLQDGH
RYSDKDVWKPEPCRICVCDTGTVLCDEIICEELRDCPSPEIPFGECCPICPTEQPSGHPG
PKGQKGEPGDIKDVVGPRGPPGPQGPAGEQGQRGDRGEKGEKGAPGPRGRDGEPGTPGNP
GPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGSPGPQ
GFQGNPGEPGEPGAAGPMGPRGPPGPPGKPGDDGETGKPGKSGERGPPGPQGARGFPGTP
GLPGVKGHRGYPGLDGAKGEAGAPGAKGESGSPGENGSPGPMGPRGLPGERGRPGPSGAA
GARGNDGLPGPAGPPGPVGPAGAPGFPGAPGSKGEAGPTGARGPEGAQGPRGESGTPGSP
GPAGAPGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIA
GFKGEQGPKGETGPAGPQGAPGPAGEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQD
GLAGPKGAPGERGPAGLAGPKGATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPTGAP
GEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAA
GPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGESGKPGDQGVPGEAGAPGLVGPRGER
GFPGERGSPGAQGLQGPRGLPGTPGTDGPKGATGPAGPNGAQGPPGLQGMPGERGAAGIA
GPKGDRGDVGEKGPEGAPGKDGARGLTGPIGPPGPAGPNGEKGESGPPGPSGAAGARGAP
GERGEPGAPGPAGFAGPPGADGQPGAKGEQGEPGQKGDAGAPGPQGPSGAPGPQGPTGVT
GPKGARGAQGPPGATGFPGAAGRVGPPGPNGNPGPPGPPGSAGKDGPKGSRGDAGPPGRA
GDPGLQGPAGPPGEKGEPGEDGPAGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPS
GEPGKQGAPGSAGDRGPPGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGAAGVKGDRGET
GPVGAPGAPGAPGAPGPVGPTGKQGDRGETGAQGPMGPSGPAGARGMPGPQGPRGDKGEA
GEAGERGLKGHRGFTGLQGLPGPPGPSGDQGAAGPAGPSGPRGPPGPVGPSGKDGSNGMP
GPIGPPGPRGRSGEPGPAGPPGNPGPPGPPGPPGTGIDMSAFAGLGQPEKGPDPGRYMRA
DEAVPGLRPHDAEVDATLKALNNQIESIRSPEGSRKNPARTCRDIKLCHPDWKSGDYWID
PNQGCTLDAIKVFCNMATGETCVYPSPGSIPRKNWWSSKAKEKKHVWFAETINGGFHFSY
GAEDLAPNTANIQMTFLRLLSTEGSQNVTYHCRNSVAYLDEESGSLRKALLIQGSNDVEI
RAEGNSRFTYSVLEDGCTKHTGKWGRTVIEYRSQKTSRLPIVDIAPMDIGGPEQEFGVDL
GPVCFL
NT seq
4521 nt
NT seq
+upstream
nt +downstream
nt
atgcccggacaccgcccggcccccggcggccgccgcaccgagtccccagccaccggcgcg
gtccccggagccgccccccggccggggctcctgctcctcctactcctctgcctcgccgct
gccgccgccgcgcaggaccgagacctccccgaggctggcagctgcctgcaggacgggcac
cgctacagcgacaaggacgtgtggaagccggagccgtgccggatctgcgtgtgcgacacg
gggacagtgctgtgcgacgaaatcatctgcgaggagctgcgggactgccccagccccgag
atccccttcggagagtgctgccccatttgccccaccgagcagcccagtgggcatccaggc
cccaagggacaaaaaggcgaacccggtgacatcaaagatgtcgtaggaccccgaggaccc
ccaggcccgcagggccccgcaggtgagcagggacagcgaggggaccgcggcgagaagggt
gagaagggcgcccctggcccccggggcagggatggggaacccggaactccaggaaatccc
ggcccccccgggccccccggacccccaggaccccccggcttgggggggaacttcgcagct
cagatggccggaggcttcgacgagaaggccggaggggctcagatgggtgtcatgcaggga
cccatgggccccatgggaccccgcggcccccccggcccctctggctcccccggtccccaa
ggattccaaggcaaccccggtgagcccggcgagccaggcgctgctggtccgatgggtccc
cggggacctccgggacctcctggcaagcccggtgacgacggcgagacaggcaaacccggg
aaatccggcgagcgcggccctcccggcccccagggcgctcgtggcttccccgggaccccc
ggcctgcctggagtcaaaggccaccggggctaccccggcctggacggcgccaagggagag
gcgggagcacccggagccaagggcgagtccggctccccgggcgagaacggctcccccggc
cccatgggtccccgcgggctgcccggagagcgaggccgtccgggcccctcgggcgctgcg
ggcgctcgtggcaacgacggcctcccgggcccggccggacccccgggtcccgtcggcccc
gcaggagcccccggcttccccggcgcccccggctccaagggtgaagcgggtcccaccgga
gcgcgaggacccgagggtgcccaagggccccgcggagaatccgggacccccggctcgccc
ggccccgccggtgcccccgggaacccagggacggatggcatccccggagcaaaaggatcg
gcgggcgctccaggcatcgccggcgctccaggattccccggcccccgcggcccacccgga
ccccagggagccaccggccctctgggccccaagggacagacgggcgaacctggcattgcg
ggattcaaaggcgagcagggacccaaaggagagacgggccctgcaggaccccaaggtgcc
cccggaccagccggggaggaagggaagagaggagcccgcggagaacccggagctgccgga
cctttgggtccacctggagagaggggcgctcccggcaaccgtggcttcccagggcaggat
gggctggctggccccaagggggccccgggtgagcgcggccccgctggcctggccggcccc
aaaggagccaccggcgaccccggacgccctggagagcctggcctgcctggagccaggggt
ctcacaggccgccccggggatgctgggccccaaggcaaagttggccccacaggcgcccct
ggcgaggatggacgccctggaccccccggcccccagggggctcggggccagcctggcgtt
atggggttccctggtcccaaaggtgccaatggtgagcctggaaaagccggtgaaaaagga
cttcccggagcgccagggctgaggggacttcctggcaaggacggagagactggagctgct
ggacccccgggacctgccggcccagcaggggagaggggagagcaaggagcccccggcccc
tccggcttccaggggctgccagggccaccaggtccccccggcgagagcggcaaacccgga
gatcagggtgttcctggagaagctggagcccccgggcttgtgggtcccaggggcgagcgc
ggcttccccggtgagcgcggctctcccggcgcccagggcctgcaggggcctcgcggcctc
cccggcacccctggcaccgacggacccaagggtgccactggccctgccggccccaacgga
gcccagggacccccgggactgcaggggatgcctggggagagaggagctgccggcatcgcc
ggtcccaagggggacaggggagacgtcggagagaagggacccgagggagcccccggaaag
gacggagctcgtggtctgaccggtcccatcggcccccctggccctgctggccccaacggc
gagaagggcgagtctggcccccctggcccgtctggagctgccggtgcccgcggtgcccct
ggagagcgcggagagcccggagcccccggccctgccggatttgccggacccccgggtgct
gatggccagcccggagccaaaggcgagcagggggagcccggccagaagggcgatgccgga
gctcctgggcctcaaggtccttctggggctcctggaccgcagggtcccacaggtgtcact
ggtcccaaaggagctcgaggcgctcagggacccccgggagccaccggattccccggagct
gccggacgcgtcggaccccctggcccaaacggtaaccccggcccccccgggccccccggc
tcagcgggcaaggacggccccaagggctcgcggggcgacgcgggacccccgggccgagca
ggggacccagggctgcagggccctgccggcccccccggcgagaaaggcgagcccggcgag
gacggccctgcgggtccggacggtccccctggtccccaggggctggcaggacagcgcggc
atcgtggggttgccggggcagcgcggcgagcgcggattcccaggactgcccgggccctcg
ggagagcctggaaaacagggagcacctggatctgccggtgaccggggaccccccgggccc
gtgggaccccccgggctgacggggccagccggagagcccggcagggagggaaatcccggc
tctgacggacccccaggcagggatggggcggccggagtgaagggtgatcgtggggagacc
ggccccgtgggtgctcccggtgctcccggagctcctggcgctcccggccctgtgggaccc
actggaaaacaaggagacagaggagagacgggtgctcagggtcccatgggtccctctggc
cccgctggcgctcggggaatgccgggtccccaggggccgcgcggtgacaaaggcgaggcg
ggcgaggccggcgagcgtggcctgaaggggcaccggggcttcacagggctccaggggctg
cccgggccccccggtccttctggagaccagggtgctgccgggccagcgggtccctctggg
cccaggggtccccctggccccgtgggcccctcaggcaaggacggctctaatgggatgccc
ggacctatcggcccccctgggccccgcgggaggagcggcgagcccggcccggcgggtccc
cctgggaaccctggcccacccggcccgcccgggccccccggcaccggcattgacatgtca
gcgtttgcggggctggggcagcctgagaagggccccgaccccgggcgctacatgcgggca
gatgaggcggtgccagggctgcggccgcacgatgccgaggtggacgccaccctcaaggcc
ctcaacaaccagatcgagagcatccgcagccccgagggctcccgcaagaacccagccagg
acctgccgagacatcaaactctgccaccccgactggaagagcggcgattactggatcgac
cctaaccagggctgcaccctggacgccatcaaggtcttctgcaacatggccacgggggag
acatgtgtgtaccccagccccggcagcatccccaggaagaactggtggagcagcaaagcc
aaggagaagaagcacgtctggtttgccgagaccatcaatggtggcttccacttcagctac
ggcgctgaggacctggcacccaacacggccaacatccagatgactttcctgaggctgctg
tccaccgagggctcccagaacgtcacctaccactgccgcaacagcgtggcctacctggac
gaggagtcgggcagcctgaggaaggcgcttctcatccagggctccaatgatgtcgagatc
cgtgctgagggcaacagccggttcacctacagcgtgctggaggacggctgcacgaaacac
actgggaagtggggcaggactgtcatcgagtaccgctcacagaagacgtcgcgcctgccc
atcgtggacattgcacctatggacattgggggacccgagcaggagtttggggtcgacctc
ggccccgtctgcttcttgtaa
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integrated database retrieval system
