Pseudopodoces humilis (Tibetan ground-tit): 102112616
Help
Entry
102112616 CDS
T02921
Symbol
RAD50
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
phi
Pseudopodoces humilis (Tibetan ground-tit)
Pathway
phi03440
Homologous recombination
phi03450
Non-homologous end-joining
phi04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
phi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
102112616 (RAD50)
03450 Non-homologous end-joining
102112616 (RAD50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
102112616 (RAD50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phi03032
]
102112616 (RAD50)
03400 DNA repair and recombination proteins [BR:
phi03400
]
102112616 (RAD50)
DNA replication proteins [BR:
phi03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
102112616 (RAD50)
DNA repair and recombination proteins [BR:
phi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
102112616 (RAD50)
BRCA1-C complex
102112616 (RAD50)
NHEJ (non-homologous end-joining)
MRX complex
102112616 (RAD50)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rad50_zn_hook
SMC_N
AAA_21
AAA_23
SbcC_Walker_B
AAA_15
DUF2703
AAA_29
AAA_24
AAA_13
Motif
Other DBs
NCBI-GeneID:
102112616
NCBI-ProteinID:
XP_005523539
LinkDB
All DBs
Position
Unknown
AA seq
1312 aa
AA seq
DB search
MSRIEKMSILGVRSFGVEDKDKQIITFFNPLTILVGPNGAGKTTIIECLKYISTGDFPPG
TKGKTFVHDPKVANETDVRAQIRLQFRDVNGELVAVQRSMVCTQKGKAPEFKTLESVITR
TKHGEKVSLSSKCAEIDREMISALGVSKSVLNNVIFCHQEESNWPLSEGKALKQKFDEIF
SATRYIKALEALRQVRLKQSLKVKECQTELKYLKQNKEKAQEIQDHLSNREAQLAASKEN
VISIENQLEPLKSSLAVVEQNLTKVMRLDNDVKALESRKRQMEKDNQDLQQKMEKVFQGT
DEQLRDRHQNHQRIVKEKEKRLLDCKRDLDRATKECQRFNSEKSELLIEQGRLQLQADRH
QEHIVMRDSLIQSLAAQLELEGFERAPFTERNIARFRGLVKDRQERDTEAANHMMREFAQ
KEAMKQKQVDEIRDKKTGLERTIDLKSDIQNKKQAELKNVKCELQQLEGFSDRISELDEE
IGKMEYELEKAERSSNVETLEQEVQTLQSEKINLDKALRKLDQEMEQLNLHTTTITQMEM
LRKDKAEKEDQIRKVKSRHSDELTSLLGYFPNKKQLEDWLHGKNKKINQTRDALANLNKR
LASVEYDKTYASNELKKKEAQLSFHEAKLFDVCGSQDFDSDLNKLQDEIEKNSKQRAVLA
GATAIYSQFITQLTEENQSCCPVCQRAFQTEAELQDVISDLQSKLRLAPDKLKSTESELK
RKEKKRDEMMSLKPLRQTVIELQDKEIPDLRSKIQNANRDLTGLKGEIEEQESLLQTALS
EEEGAKACLQDISLMERYQTDIRDVERKIAQQEAKLLRVDLSRTVLQVSQEKQEKKHLWD
TVTGKIELNQKLKQDQQSQIQQLKSAVNELKAEKLQIVSRMQRRRQLEEQTVELTTEVQS
LCREIKEAKEQVLPLHSTLEKLQQEKEELVNKRTASNKETQEKMNGINEKIKDINKYMKE
IENYIQQGKEEYKKQKESELDEVNSRLAACEKQKEKISKEMEMTRQDIDTQKIQERWLED
NLTLRKRNEELKEVEDNIKQLMKQMGEMKVPQMKNEQKHLEEKIESLKRNHHVALGRQRG
FEEEIVRFRKELREPQFKDAEEKYRDMMIVMRTTELVNKDLDLYYKALDKAIMTFHSMKM
EEINKIIRDLWRSIYRGQDIEYIEIRSDADENVSATDKRRNYNYRVVMVKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLSCGILALDEPTTNLDRENIESLAHALVEIIKSRLHQR
NFQLLVITHDEDFVELLGRSEYVETFYRIKKNIDQCSEIMKCSVSSLGSYVH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaggattgaaaaaatgagtatcctcggagtgaggagttttggggtagaagataaa
gacaaacaaattatcactttctttaatccattaactattttggtgggaccaaatggtgca
ggaaaaacgactatcattgaatgtcttaagtacatatccactggtgattttcctccaggc
accaaaggaaaaacatttgttcatgatccaaaggttgcaaatgaaactgacgttagagct
cagataaggttacagtttcgagatgtcaatggggagcttgtagctgtccagcgctccatg
gtctgtacccagaaaggcaaggctccagaatttaaaacactggaatctgtcattactaga
acaaagcatggtgagaaagtcagtctgagttccaagtgtgctgaaatagatcgggagatg
atcagtgcccttggtgtttccaagtctgtgcttaacaatgtcattttctgtcaccaagaa
gaatccaactggccgttaagtgaaggcaaggccctgaagcaaaaatttgatgagatcttt
tcagcaacaaggtatatcaaagcactcgaagctctgcgtcaggtacgactgaaacaaagc
ttgaaagtaaaagagtgtcagacagaactgaaatatctaaaacagaataaagagaaagca
caggaaatccaggatcatctcagcaacagagaggctcaactggctgcttctaaggagaat
gtaatatcaattgagaatcagcttgagcctctaaagagctctctggcagtagttgaacag
aatctcacaaaagtaatgaggttggacaatgatgtgaaggcccttgagagcaggaagcgg
cagatggaaaaagataatcaagatttgcaacagaagatggaaaaggtttttcaaggaaca
gatgagcaactaagggatagacaccagaaccaccagagaatagtgaaggagaaggagaag
aggttgttggactgtaagcgtgatttagatagagccactaaagaatgccagagatttaac
agtgagaaatcagagctgcttattgaacaaggtcgtcttcaactgcaggcagatcgtcac
caagagcacattgtgatgagggattccttaattcagtctctggcagcacagctggaatta
gaggggtttgagcgagcacctttcactgaaaggaacattgccagatttcgtgggttggtg
aaggacagacaggagagagatacagaagctgcaaatcatatgatgagagaatttgcacag
aaagaagcaatgaagcaaaaacaggtagatgaaataagagacaagaaaactggattagaa
agaaccattgacctgaaatcagacatccaaaataagaagcaagcagagctgaagaatgta
aaatgtgaattgcagcagttggaggggttttcagacaggattagtgagttggatgaggag
attggcaagatggaatatgagctggagaaggctgagaggagcagtaatgtagaaacactg
gaacaggaagtacagactctgcaaagtgagaaaataaacctggacaaagctcttaggaag
ttggatcaagagatggagcagttgaatctacacaccacaacaattacccaaatggagatg
ctgaggaaagacaaagcagagaaagaagatcagattagaaaagtaaagtcaagacattcg
gacgaactaacatcattgctgggatactttcccaataaaaaacaacttgaggactggctt
catggtaaaaataaaaagattaatcagacaagggatgctcttgctaatctgaacaagcga
ctggcatcagtagaatatgataaaacttacgccagtaatgagctaaaaaaaaaagaagcc
cagttgtcctttcatgaagcaaaactttttgatgtttgtggaagtcaagattttgacagt
gacctgaacaaacttcaagatgaaattgaaaaaaattccaaacagcgagctgtgcttgct
ggagccactgcaatttattcacagttcattacacaactgacagaggagaaccagtcttgt
tgtccagtttgccaaagagcttttcagacagaagctgagctgcaagatgtcattagtgat
ctgcagtctaaactgcgccttgccccagacaaactgaagtcaacagagtctgagcttaaa
agaaaagagaaaaaacgtgatgaaatgatgagtcttaaaccactgcggcaaactgtaatt
gaactccaagataaggaaattccagacctgaggagcaagatccagaatgcaaacagagat
ttaacaggcctgaagggtgagatagaagaacaggaatcactcctccagacagctttgtct
gaggaagaaggtgccaaagcatgtttacaggatataagtctgatggaaaggtatcagact
gatattagggatgttgaacgaaaaattgctcagcaggaggctaagctgctacgtgtcgat
ttaagtagaactgtgctacaagtaagccaagaaaaacaagagaagaaacacttgtgggat
acagttactggtaaaattgagttaaatcaaaaactcaagcaggaccagcaaagccagatt
cagcagttgaagagtgcagttaatgaactcaaagcagagaagctgcagattgtcagccgc
atgcagcggcgccggcagctggaggagcagactgtggagttaaccactgaggttcagtcc
ttatgcagagagatcaaggaagcaaaagaacaggtacttcctttgcattcaacgttagag
aaattgcagcaggagaaagaggaactagtgaataaaaggactgcaagtaataaagaaaca
caagagaagatgaatggcataaatgagaaaattaaagatataaacaagtacatgaaagaa
attgaaaactatattcaacaagggaaagaagaatataaaaagcaaaaggagtctgaactt
gatgaagtaaattctcgtttggctgcctgtgagaaacagaaggaaaagataagtaaagag
atggaaatgacccgacaagatattgacactcaaaagatacaggaaaggtggttggaggat
aatctcactttgaggaagcggaatgaagagctaaaagaagttgaagacaatataaaacaa
cttatgaagcagatgggagaaatgaaagttccccagatgaaaaatgaacaaaaacatttg
gaagagaaaatagaatctctgaaaaggaaccatcacgttgcacttggccgccagcgtggg
tttgaagaggagattgttcgctttagaaaggagctcagagagccacaattcaaagatgca
gaagaaaaatacagggacatgatgattgtcatgagaacaacagagctggtgaacaaagat
ctggacctttattacaaggctcttgataaagcaataatgacatttcatagcatgaaaatg
gaagaaattaataaaataattcgggacctgtggcgaagcatttacagaggacaagatatt
gaatatatagaaattcgctctgatgcagatgaaaatgtctcagccactgacaaaagacga
aattacaattacagggtagtaatggtgaagggagatacagcactggatatgcgaggaaga
tgtagtgctgggcaaaaggtgcttgcttctctaatcattcgtcttgctctagcagaaaca
ttctgtctcagctgtggcattctggctctggacgagcccacaaccaaccttgaccgagaa
aacatcgagtccctggcacatgccctggtggagataataaagagccgcttacaccaacgc
aactttcagcttctggtgataactcacgatgaagattttgttgaacttctgggccgttct
gagtatgtggaaacattctacaggataaagaagaacattgaccagtgctctgagatcatg
aaatgcagtgtcagctcgctaggctcctatgttcattag
DBGET
integrated database retrieval system
