Pseudopodoces humilis (Tibetan ground-tit): 102112896
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Entry
102112896 CDS
T02921
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
phi
Pseudopodoces humilis (Tibetan ground-tit)
Pathway
phi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102112896 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
phi03041
]
102112896 (DDX42)
Enzymes [BR:
phi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102112896 (DDX42)
Spliceosome [BR:
phi03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
102112896 (DDX42)
Complex B
102112896 (DDX42)
Complex C
U2 SnRNP specific factors
102112896 (DDX42)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
SBSN_GxHH_rpt
Motif
Other DBs
NCBI-GeneID:
102112896
NCBI-ProteinID:
XP_014116518
LinkDB
All DBs
Position
Unknown
AA seq
1054 aa
AA seq
DB search
MVSCCHEQQFPPKSTAELWSRLEIEQAPSWYIGDIMNWNKGGPGTKRGFGFGGFAITPGK
KEEPKLSQQSHSAFGTAGSSAAFAKSGPPQLPSFYKIGSKRANFDEENAYFEDEEEDSSN
VELPYIPAENSPTRQQFHSKSADSDSDDDPLEAFMAEVEDQAARDMKRLEDKDKEKKNVK
GIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDNLEYDSDGNPIAPSKKIIDPLPPIDH
SEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLNLRVSGAAPPRPGSSFAHFGFDEQLM
HQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGD
GPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPG
RLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKI
EKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPSGPSKWNWLTRRLVEFTSSGSVLLFV
TKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILVATDVAARGLDIP
SIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVS
KELLDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGYRERPGLGSENTDRGNNNSVMSNYEA
YKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLNNQKTGSSAAGASGWTSAGSLNSVPTSS
AQQSAASPESPAAAAAKGVPGFPSTGSLSGSPTFPSAGAPAFNSANAGSSGREGSGGIVR
ERYNDTRNSRHSEAPRRGDGAGRGEGAGRYNDAQRYGDAQRYGDAQRHNDAQRHSDTQRY
NDAQRYNDTQRYGDAQRYGDAQRYNDAQRYNDAQRYGEPQRYGEPQRYGDAQRHNDPQRY
GDAQRYGDAQRDSGGSSRHSDPSRHGDVQRHGEGRHFSDLPGGNRNNGDSRTSEGRNSES
RNGENRREANSRDNKTDGFAVPEPPKRKKSRWDS
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atggtcagctgctgccatgaacagcagtttcccccgaaatctactgctgagctttggtct
cgactcgagattgagcaagctccaagctggtatattggggacatcatgaattggaataaa
ggtggacctggtacaaagagaggctttgggtttggtggatttgccataacacctggcaag
aaagaggagcccaagctgtctcagcagtcccacagtgcttttggcaccgctgggtcctca
gcagcatttgcaaaatcagggcctcctcagttgccttccttctacaaaattgggtcaaag
cgagccaattttgatgaggagaatgcgtactttgaggatgaggaggaagattccagcaat
gtggaattgccctacattcccgcagagaattcccccactcggcagcagttccattccaag
tcggcagactctgacagcgatgatgatcctctggaggcattcatggctgaagtggaggat
caagctgctcgagacatgaagagacttgaagataaagacaaagaaaaaaagaacgttaag
ggtattcgagatgacattgaagaggaagatgaccaagaagcgtattttcgctacatggct
gaaaaccccactgctggtgtggtgcaagaggaggaagaggataacctggagtatgatagt
gatgggaatccgattgcaccgtccaaaaaaatcattgatcctcttccacctattgaccat
tcagagattgaatacccaccgtttgagaaaaacttctatgatgaacatgaggagatcacc
agcctgacccctcagcaagtggtggagttacggcataagctgaatctccgggtctccggg
gctgctcctccaaggcctggcagtagttttgctcattttgggtttgatgagcaacttatg
caccagattaggaaatctgaatatacccaacccactccaatacaatgtcagggtgttcca
gtggcactaagtggcagagacatgattgggatagccaagactggaagtgggaagacagct
gccttcatctggccaatgctgatccacatcatggatcagaaggagctggagccaggggat
ggtcccattgcagtgatcgtctgcccgaccagggagctctgccagcagatccactccgag
tgcaagcgctttggcaaggcctataacctgcgctccgtggccgtgtacggaggagggagc
atgtgggagcaagccaaggccctgcaggagggggcagagatcgtggtctgcacaccaggt
cgtttgattgatcatgtgaaaaagaaagctacaaacctgcagagagtcacttaccttgtg
tttgatgaagctgacagaatgtttgatatggggtttgaatatcaggtcagatcaattgca
agccacgtacgtcctgacagacagaccctcttgttcagtgccacgttccgtaagaagatt
gagaaattggcccgggatattctgatcgacccaattcgggttgtgcaaggagacattgga
gaggcaaatgaagatgtcactcagattgtggagattttcccctctgggcccagcaagtgg
aactggctgacgcggcgccttgtggagttcacatcctccgggagcgtcctcctctttgtc
accaagaaagccaacgcagaggaactggccaataacctcaagcaggaggatcataacctg
gggctgcttcatggagacatggaccagagtgagaggaataaagtcatttcggaatttaag
aaaaaggggatccccatcctggtagctactgatgtggcagctcgagggttggatatccct
tccatcaagactgtcatcaactacgacgtggctcgggacatagacacccacacgcatcgg
atcggccgcaccggccgtgcgggggagaagggagtggcctataccctgctgacccccaag
gacagcaacttcgctggggaccttgtcagaaacctggagggtgccaaccagcacgtttcc
aaagagctgctggatttggcaatgcagaatccgtggttccggaaatcccgatttaaagga
gggaagggcaagaagctgaatattggtggtggtggcttgggataccgtgaacgccccggg
ctgggttcagaaaatactgaccgtggaaacaacaacagtgtgatgagcaactacgaggcc
tacaagccatccacaggggccatgggggacaggctgacagcaatgaaagcagctttccag
tcccagtacaagagtcactttgttgctgcaagtttaaataaccaaaagactgggagctct
gctgctggtgccagcggctggaccagcgccgggagcctgaactcggtcccgacgagttca
gcgcagcaaagtgccgccagtcccgagagccccgcggcagcggcagcaaagggagtcccg
ggtttccccagcacgggcagcctgagcggcagccccaccttccccagcgcgggagcgccg
gccttcaacagcgcaaacgccggcagcagcggtcgcgagggcagcggtggcatcgtcaga
gaacggtacaacgacacccggaacagccggcacagcgaggccccgcggcgcggggacggc
gctggccgaggggagggcgctggtcgctacaacgatgcccagcgttacggtgatgcccag
cgttatggtgatgcccaacgccacaacgatgcccagcgccacagtgatacccagcgctac
aatgatgcccagcgctacaatgatacccagcgttacggtgatgcccagcgttacggtgat
gcccagcgctacaacgatgcccagcgctacaacgatgcccagcgttatggtgaaccccag
cgttatggtgaaccccagcgttacggtgatgcccagcgccacaacgatccccagcgttac
ggtgatgcccagcgttacggtgatgcccagcgcgacagcggcggcagcagccggcacagt
gacccctcccggcacggtgacgtccagcgccacggcgagggccggcacttcagtgacctg
ccaggcggcaaccgcaacaacggtgacagcaggaccagcgagggtaggaacagcgagagc
aggaacggagagaacaggagagaggccaacagccgagacaacaagacagatggttttgct
gtcccagagcccccaaaacggaagaagagccggtgggacagttaa
DBGET
integrated database retrieval system
