Pseudopodoces humilis (Tibetan ground-tit): 102112926
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Entry
102112926 CDS
T02921
Symbol
PALB2
Name
(RefSeq) partner and localizer of BRCA2
KO
K10897
partner and localizer of BRCA2
Organism
phi
Pseudopodoces humilis (Tibetan ground-tit)
Pathway
phi03440
Homologous recombination
phi03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
phi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
102112926 (PALB2)
03460 Fanconi anemia pathway
102112926 (PALB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phi03400
]
102112926 (PALB2)
DNA repair and recombination proteins [BR:
phi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
102112926 (PALB2)
FA (Fanconi anemia) pathway
Downstream FA components
102112926 (PALB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
102112926
NCBI-ProteinID:
XP_014107899
LinkDB
All DBs
Position
Unknown
AA seq
1308 aa
AA seq
DB search
MEAPPAAAALSGADKEKLREKLALLRREYSETVIRLRRARRAERARNHGRRERSPTGLQH
SDPDCFRDNTCPSTDRGGPSQVETKTCSDADTEKTTSVTVKHVPEFSSDEVSPQDSSRAE
GFQAGQENLCCGITRPVPVEKKPQTSRGMMKLRRRTKALESKGGESVHGVHLISAGEMMK
NQIASAEELQSPVFRRSSLLHTEEPAQRAPGVVLVQGERNSFTPDAASGSPRAPHPHMRD
SSDVWQPESSRAVATPERCEPCLQHGASVLPDPRGDGREEPPSIIKQPEVQSLCEDQGEL
RGLLDLMSENEILPDSRNNTITEESKNHEGHQSDTNTLNPCPAANALDNAEGFLENQQLE
IQSRLPPDKAAAPEGTLSSCTVVEGLLFPVEYYVRTTRRMSNCQRKVDLEAVILSQLGRS
KKGQRSKCKQKDAKPNQPSQERAEDDLEPGVVPFPFLGAENNQAISSSSQKSLPASSSSS
STSLESISQKSITSTRQEQRQPQRKQKGRRKSACKAPMHPVSQELIESQDPTVASESSAP
LSNENQSEKENCDANLERSSSDERRLPGAAALGSAGTGVTGATQPAGPDPPAGRSQAPGS
CHKTLLERVQNPHHSSNSLSPGSDTLASPVGDVEASAPVCQGDKHPGQRVTRQRGAGDAG
VSVPVRRSLRCSARHGAQTGSADGSSRGRSCPVGSQGPAALGLPALDPSTCGSLFSFRSL
QWLIPKLGIRDFHLPNEEFGVLKLEKLKSCPVNDLEDFVSGDGVAPEDTPDAQTKPKEKS
LRSNLILPSKLGLPELPCMESLTSKKELSTHELLFTPMGTVLSEAPAHPESQISSSVFPA
VGATPDVLPSVHSEVFPDTSVPALPATPSSPRGAAALVLGDVAHRDPAVPLHPDSCAAGA
ARSQEEQGTTVPSAAERGPENKSDETVSLEKHQQSENKEQESCKASPEQKTDVAEQLTPV
LLDGPREESLQFVSELKDSSCSCAVDVSTVWWAAAGRRELRVVTASESAVALWEPLAPDC
WGKVYTWHLREIPVIQIVPLPDTCNLVCVALGELEIGEIRLLLYSSETDSFKHSLVKTGN
IKAVVGLKDQRLVSSSRTMQEQQLEMVFLSETGGSKDRQTLMAPDETVTAFAEVEGMREA
LVGTTAGNSVVVWNLKTGQLLRKMHVGYSYPASICHRAYSDSGLLFVVLSHPHAKESESC
GSPAFRLVAFNPRTGRSAGLMFSCLPPGRAGRYLEGDVWDTAGAAVLTSGAVAVWDLLRG
RCTAVLPAGPAGRWALARWAAGGAGLLAGSRTGTVHLYRYRPPEPGAA
NT seq
3927 nt
NT seq
+upstream
nt +downstream
nt
atggaggccccgccggcagcggcggccctcagcggcgccgacaaggagaagctgcgggag
aagctggcgctgctgaggcgggagtacagcgagaccgtgatccggctgcggcgggcgcgg
cgagccgagagagccaggaaccacggccggcgggagcggagccccacaggtctgcagcac
tctgaccctgactgttttagagataatacatgtcctagtactgacagaggtgggccctct
caggtagagactaaaacctgctctgatgctgacacggagaagacaacatctgtcacagtt
aagcatgttccagaattctccagtgatgaggttagcccacaggacagctcccgggcagaa
ggctttcaggccggccaggaaaacctgtgctgtgggatcaccaggcctgtccctgtggag
aaaaagccccaaacctcccgaggaatgatgaagctgcggagacggacgaaggctctggaa
tcaaagggaggggaatcagtgcatggtgtgcatctaatcagtgctggtgaaatgatgaaa
aatcaaattgccagtgcagaggagcttcagtcaccagtgttcaggcgcagcagcctcttg
cacactgaggaacctgctcaaagagcacctggggtggtgcttgtgcagggagaaagaaac
agtttcactcctgatgcagcatctggatccccacgtgccccacatccccacatgagggac
agcagtgacgtctggcagcctgagtcctcaagggctgtggccacacctgagagatgtgag
ccatgtttacagcatggagcgtctgttttacctgaccccagaggtgatggcagagaagaa
ccccccagtataataaaacagccagaggttcagagtttgtgtgaagatcagggagaatta
cgtgggctcctggatttaatgtcagaaaatgaaatattgcctgacagcagaaataacacc
ataactgaggagagcaagaaccacgaaggacatcaaagtgacactaataccttaaatccc
tgtcctgcagctaatgctctggacaatgctgaaggattcttggagaatcaacagcttgaa
attcagtcaaggcttcctcctgacaaggcagcagctcctgagggcacgctgagctcttgc
acggtggttgaagggctgctcttccctgttgagtactatgtccggacaacgcgccgcatg
tcgaattgccagaggaaggtggacctggaggctgtaatcctcagccagctgggcaggagc
aagaaaggtcagcggagtaaatgcaagcagaaagatgcaaagcccaatcagccctctcaa
gagagagctgaggatgatttggagccaggggttgtgcccttcccttttctaggggcagaa
aacaatcaagcaatctcaagtagttctcagaaatctcttcctgcgtccagcagcagcagc
agcacttctcttgaatccatttctcagaaaagcatcactagcacaaggcaagagcaaaga
caaccccagaggaaacagaagggaagaagaaagtctgcctgcaaagcccccatgcatcca
gtgtcacaggagcttatagagagtcaggatcccacagtggccagcgagagcagtgctccg
ctctcaaatgagaaccagagtgaaaaggaaaactgtgatgctaaccttgaaaggtcatcc
tcagatgagaggagattgcctggtgctgcagcactggggtctgcagggacaggagtgact
ggagctacacagccagcgggtcctgatcctcctgcgggcaggagccaagcgccgggcagc
tgccataagactttgttagagcgggtccaaaatccccaccacagcagcaattccctgagc
ccagggagtgacactttggccagccctgtgggagatgtggaagccagtgctcctgtgtgt
cagggagataaacatccagggcagcgtgtgacgaggcagcgaggagccggtgacgccggg
gtcagtgtccctgtgcgccgctccctgcgctgctctgcgagacacggggcccagacaggc
tcagcagatggcagcagcagaggacgcagctgtcccgtgggttcacagggtcctgctgcc
ctcgggctccctgctctcgaccccagcacttgtggctccctcttctccttccgcagcctc
cagtggctgatccctaagctgggcatcagggacttccacctaccaaatgaggaatttgga
gtgctgaaactagagaaattgaaatcttgccctgtgaatgacttggaggattttgtgtct
ggggatggtgtggctccggaggacacaccggatgcacaaacaaagccaaaagaaaaaagt
ctcagaagtaatttgattttgccttccaaacttggattgcctgaactcccttgcatggaa
agcctgacttccaagaaggagctttccacccatgaattgctatttactcccatggggact
gtcttatctgaggctcccgctcaccctgagtctcagatttcctcgtctgtttttcctgct
gtgggtgcaaccccagatgttttaccttcagtgcacagtgaggtcttccctgacacatct
gtacctgccttgccagcaaccccatcttcccccagaggggcagctgccctggtcctgggt
gatgtggcacacagagaccctgctgtgccactgcaccccgacagctgtgctgcaggggct
gccagaagccaggaggagcaaggtacaacagttccttcagcagctgaaagaggtcctgag
aataaatctgatgagactgtgtccttggagaagcatcagcagtcagagaacaaagagcag
gaatcctgcaaagcttcacctgaacagaaaacagatgtagcagaacagttgactccagtg
ctgctggatggccccagagaagagagcttgcagtttgtgtcagagctgaaggattcctcg
tgctcgtgtgccgtggatgtgagcacggtgtggtgggcagcagctggccgcagggagctg
cgagtggtcactgcctccgagagcgccgtggccctctgggagcccctggcacccgactgc
tggggaaaggtctacacctggcacctcagagagattcctgtaatccagattgttcctctg
ccagacacctgtaaccttgtatgtgtagcgctgggagagctggagattggagaaataagg
ctcttactttattcttctgagactgactcattcaagcactccctagtgaaaactgggaac
ataaaagcagttgttgggctaaaggaccagaggctggtgagcagcagcaggaccatgcag
gagcagcagctggagatggtttttctctcagagacaggggggagcaaggacaggcagact
ctgatggcccctgatgaaactgttacagcctttgctgaagtggaagggatgagagaggcc
ttggtgggcaccactgcagggaacagcgttgtggtttggaatctgaaaacaggtcagctc
ctgaggaagatgcacgttggttattcctacccagcttccatctgccatcgagcgtattct
gactctggccttctgtttgttgttttgagccaccctcatgccaaagagagcgagtcctgt
ggaagcccagcgttccgtttggtggccttcaacccccgcacgggccggagcgcggggctg
atgttctcgtgcctccccccgggccgtgcaggcaggtacctggagggtgacgtgtgggac
accgcgggagccgccgtgctgacgtcgggtgccgtggccgtgtgggacctgctgcggggc
cggtgcacggcggtgctgcccgcgggccctgcggggcgctgggcgctggctcgctgggcc
gccggcggggccgggctgctggccgggagccgcaccgggaccgtgcacctgtaccggtac
cggccccccgagcccggagccgcctga
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