Pseudopodoces humilis (Tibetan ground-tit): 102114344
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Entry
102114344 CDS
T02921
Symbol
TOPBP1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
phi
Pseudopodoces humilis (Tibetan ground-tit)
Pathway
phi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
phi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
102114344 (TOPBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phi03032
]
102114344 (TOPBP1)
03400 DNA repair and recombination proteins [BR:
phi03400
]
102114344 (TOPBP1)
DNA replication proteins [BR:
phi03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
102114344 (TOPBP1)
DNA repair and recombination proteins [BR:
phi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
102114344 (TOPBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
102114344
NCBI-ProteinID:
XP_014104249
LinkDB
All DBs
Position
Unknown
AA seq
1517 aa
AA seq
DB search
MRSSKEPFFVKFIKSSGSSEYFSKALESIKEFQSEEHLQILEEESVLNIKENDKSLYICD
PFRGAGFSHLKKLGCRIVGPQVVLYCMQSQRCVPRAEYPVYNMTMADVTVSCTSLEKDVR
EEVHKYVQMMGGCVYRDLNVSVTHLIAGEVGSKKYLVAASLKKPILLPSWVKTLWDKSQQ
GIMRYTDVNMEDYACPVFLGCTICVTGLSSSDRKEVQRLTTEHGGQYTGQLKMNECTHLI
VQEPKGQKYECAKKWNVHCVSVQWFSDSIKKGFCQDEAMYKVEAGSKPCNAPSTSTPTND
TIKPPNHTLSDVSHISNINLSGVNETSCTSAMNSRLDPLSDELENLDISSFQAPEDLLDG
CRIYLCGFSGRKLDKMRRLINCGGGVRFNQLNEDVTHVIVGENNNELKQFLDKTAHRPNI
VTAEWLLESFGKGCLCPVEHYIPLNYQLLENPILEQPGMKSIFPKKPGLSKKDTVNIIKH
QKATEDDFLSQYVNNYSTLDEVEKLTSRTFSDVTNSTAQGENQPPVCNGSLAESSALAEG
GLFFGKRFLLLGFGEEDESCIADIIKENAGEVLPPQSRTMADYAVVPLLGCTVRATVGDV
VTNTWLITCAEQQALLDLRSNPLFTPVLVMEGATPLEDCVLSFSQFTGAERDSLVYLAGL
LGARVQEFFVRKASAKKGMFASTHLVVREPNGSKYEAAKKWNLPAVTVAWLLQSARTGKR
ADENKFLVENAEAEDTESFITQLSRTPAPVKAPDLEQPTYLLEAGKKGAVTPLDINRFQS
KAFQAVISHHTGKTTPVAQGGPLQKEPSLNLDTPSKFLSEDKFFKPSFDVKDALEALETP
RGPEQRTRKLSTPLSEVISRNLKLALASSTTHAAALTASPQLAAAQPEVEEEPKPLADAV
IYVSKKLSKRQRELTAIAASLGADYRWCFDETVTHFIYKGGQNDNNKEYKSVKERGIHIV
SEHWLLASARECKRLPESLFPHTYNPKMSLDISAVEDIRFSSSSKPLSAGKAAEESEIIP
VVEDDAEDDVTTDHIKEKVPVGEEQIVASESKGVLTQALEMRENFQRQLQELMSATSLVK
PQGQRRSLSRSSFDGSPATPDSARSVRNGRSRVLEALRQSRQALADTNTEPSQSEQIIWD
DPTAREERARLVSNLQWPNSPSQYLEQGQSNTSKNMDEIKGSVPDAEMADIAVPEAGDGH
VIESLKNPTCRDPEMPIKDNLIPTPQAPSIAFPLANPPVAPEPKEKVVPEDEKADEEIEK
LRKFQLSSLNPQERIDYCHLIEELGGTVLEKQYFDPNCTHIVVGHPLRNEKFLASMAAGK
WVLHRSYLEACRGAGCFVQEEDYEWGSKSVLNVLSGINVNQKKLALAAMRWRKKIHKGRQ
ETGIVEGAFSGWKVILNVDQTKEAGFRRLLQSGGAKVFSGHSASLFKEATHLFADFSKLK
PDDSRVNVAEAAAQGVNCLKPEYIADYLIQDPPPPMESYCLPEAESYLQNNSDLGTGLSQ
KRKALGEMSRVKRSRIH
NT seq
4554 nt
NT seq
+upstream
nt +downstream
nt
atgagaagtagtaaggagccgttttttgtgaagttcataaagtcttccgggagttcggag
tatttttctaaagctcttgagtctataaaagaattccagtcagaagaacatctccagatc
cttgaagaagaatcagtactcaatataaaagaaaatgataaatcactttacatttgtgat
cctttcagaggtgcgggtttcagtcatctcaaaaagcttggctgtaggattgttggacca
caggtagttctgtactgcatgcagtcgcagcgatgtgtcccaagagccgagtatcctgtg
tacaacatgaccatggccgatgtcacggtgtcctgtaccagcctggagaaggatgtgagg
gaagaagttcataaatatgtgcaaatgatgggtggatgtgtatatagagacctcaatgtg
tcagtaactcaccttatagctggagaagttggcagcaagaaatacttggtagctgcttcc
ctgaagaaacctattttgcttccttcttgggttaagacattgtgggataagtctcagcaa
ggcataatgaggtatactgatgttaacatggaagactatgcttgtcctgtgtttctgggc
tgcacgatttgtgtcactggcttaagcagctctgacaggaaagaagtgcagcgcctcact
actgagcacggtgggcagtacacggggcagctcaagatgaatgaatgcactcacctcata
gtgcaagagccaaaaggtcagaagtatgaatgtgccaaaaagtggaatgtgcactgtgtg
tctgtgcagtggttttctgacagcatcaagaaaggcttctgtcaggatgaggcaatgtat
aaagtagaggctggatcaaaaccatgtaatgcacccagtacatcaacacctacgaatgac
accatcaagcctcctaatcataccctttcggatgtcagccacatttccaatatcaatttg
agtggtgttaatgaaacttcatgtacttcagctatgaacagcagactggatcctctttct
gatgagctggagaacttggacataagttcttttcaagcccctgaagatttgttagatggg
tgtcgaatctatctctgtggtttcagtggcaggaagttggacaagatgagaaggcttatt
aattgtggtggtggcgttcgatttaatcagcttaatgaagatgttactcatgtcattgtg
ggggaaaataataatgaactgaaacaatttttggacaagacagctcacaggcctaatata
gtgacagcagagtggttactggagtcatttggtaaaggttgtctttgtccagtggagcac
tatatccctctaaactaccagctgttagagaatccaattttagaacaacctggaatgaag
tcaatttttcccaaaaaacccggtctctcgaagaaagacactgtgaacattataaagcac
cagaaagctactgaagatgacttcctctctcaatatgtaaataactattctacactagat
gaagttgaaaaactaacatccagaaccttcagtgatgttactaactcaactgcccaagga
gagaatcaacctcctgtctgtaatgggtctttggcagagtcttctgcactggctgaagga
ggcttattttttgggaagagatttcttcttctgggttttggtgaagaggatgagtcctgc
attgcagatattataaaggagaatgctggggaagttctgccaccacagagcagaaccatg
gcagactatgctgtggtacctttattagggtgcactgtgagggctactgttggtgacgtc
gtcacaaatacatggctgataacgtgtgcggaacagcaggcccttttagatctccgatcc
aatccacttttcacaccagtcctggtaatggaaggagctacccctctggaagattgtgtt
ctttcttttagccagttcacgggtgcagagagagactcccttgtttatctggcaggactc
ctgggagccagagtccaagaattctttgtacggaaagctagtgcaaaaaaaggaatgttt
gccagtacccatcttgtggtaagagagccaaatggctccaagtatgaagctgcaaagaag
tggaatttgccagcagtcactgtagcttggcttttgcagtctgcaaggacaggaaagagg
gcagatgaaaacaaattcttggttgaaaatgcagaggctgaagatacggagagtttcatt
actcagcttagcaggacaccagcacctgttaaagctcctgatttagaacagcctacttat
ctccttgaagctggaaaaaaaggagctgtgaccccccttgatatcaacaggttccagagt
aaagctttccaagctgttatctctcatcatactgggaagacaactcctgttgcacaaggg
ggaccactccagaaagaaccatctttaaatcttgacacaccatccaagtttctttcagaa
gacaagttttttaagccttcttttgatgtaaaggatgctctggaagctctggaaactcct
agaggtcctgaacaaagaaccaggaaactgagcacacctctctctgaagtcatcagcaga
aacttgaaactggcactggcaagcagcacaacacatgcagcagctcttactgccagccct
cagttggctgctgcacagccagaagtggaagaagagcccaagcctctagctgatgctgtt
atatatgttagtaaaaaacttagtaagaggcaaagggagctgactgcaatagcagcttct
cttggagcagactacagatggtgctttgatgaaacagtaacacacttcatctataaggga
ggacagaatgataacaataaggagtacaaatctgttaaagaacggggtatacatattgtt
tcagaacattggcttttagcgagtgcccgagaatgtaaacggcttcctgaatctctcttt
cctcacacttacaatcccaaaatgagcctggacatcagtgcagtggaagacatcaggttc
tcctcctccagtaaacctctttcagctggaaaagcagcagaggaaagtgagattattcca
gtggttgaagatgatgctgaagatgatgtaactactgaccacataaaggaaaaagtccca
gtaggggaagaacaaattgtagcaagtgaatccaaaggagttttaacccaagcactagaa
atgagggagaacttccaaaggcaactgcaggagctcatgtctgctacatcactagtgaaa
ccacaaggacagagaagatccctttccagaagcagctttgatggttctccagccactcct
gatagcgcacggtctgtgcgaaatggccgcagtagggtcttggaagccctaaggcagtcc
cgccaggcactggcagatacaaacacagagccatcccagagtgagcagatcatttgggat
gatcctactgcaagggaagagagagcaagacttgtcagcaaccttcagtggcctaatagt
ccttcccagtaccttgagcaaggtcagagtaacaccagtaagaacatggatgagatcaaa
ggatctgtacctgatgcagagatggctgatatagctgttcctgaggctggggatggacat
gtgattgaaagtctaaagaatcccacatgtagagatcctgaaatgccaattaaggataac
ttgatccccacgccacaggcccccagcattgctttccccctggctaaccctcctgtggca
ccagagcccaaagaaaaggttgttcctgaagatgagaaggctgatgaagaaatagaaaaa
ctccgtaaatttcagctgtcttctcttaatcctcaagaaagaattgattactgccatctg
attgaggaattaggtggaacagtacttgaaaaacagtactttgatccgaattgcacacac
attgttgtgggacatcctcttcggaatgaaaaattcttggcttcgatggcagctggaaag
tgggtgcttcatcgttcctacctggaggcatgtagaggagctggctgctttgttcaggaa
gaagactatgagtggggaagtaaatctgtacttaatgttttgtctggaatcaatgtaaac
cagaagaaactagcactggcagccatgaggtggaggaaaaaaattcataaagggaggcaa
gaaacgggtattgttgagggagctttcagtggttggaaagtgatcctgaacgttgatcaa
accaaggaagcaggattcaggcgccttcttcagtcaggaggagcaaaagttttttctggc
cattctgcatctctctttaaagaagcaactcacctctttgctgacttcagtaagctgaag
ccagatgactccagggttaacgtggcagaggcggcagcccagggagtgaactgcctcaaa
cccgagtacatcgctgactaccttatccaggatccacctccccctatggagtcttactgc
ctgccagaagctgagtcttaccttcagaataactcagatcttggaaccggattatcccag
aaaagaaaagcactgggagaaatgagcagagtcaagcgatccagaatacactaa
DBGET
integrated database retrieval system
