Pseudopodoces humilis (Tibetan ground-tit): 102114485
Help
Entry
102114485 CDS
T02921
Symbol
SLX4
Name
(RefSeq) structure-specific endonuclease subunit SLX4 isoform X1
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
phi
Pseudopodoces humilis (Tibetan ground-tit)
Pathway
phi03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
phi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
102114485 (SLX4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
phi04121
]
102114485 (SLX4)
03400 DNA repair and recombination proteins [BR:
phi03400
]
102114485 (SLX4)
Ubiquitin system [BR:
phi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
102114485 (SLX4)
DNA repair and recombination proteins [BR:
phi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
102114485 (SLX4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Slx4
BTB
zf-C2H2_jaz
B129_C2H2-zf
Baculo_IE-1
Zn-C2H2_12
zf-met
Zf-C2H2_ZNF451_C
Motif
Other DBs
NCBI-GeneID:
102114485
NCBI-ProteinID:
XP_014108025
LinkDB
All DBs
Position
Unknown
AA seq
1863 aa
AA seq
DB search
MDEQDNDFKELWANILSRAKKKAGDAEATKRAQNRPKSTTTRSKLRRGKAAAKSQTHHHL
PAVKETNLPRDLGPKEQTLVHEEDGDAAACETAQEDGERSPLPASQLSTETTECSQRSLT
VNPPSVCSQTTLPFLPATPPGTCSSPTPKVRVAELVVERMQQFKRVAPEQLKHSSDGSVP
KAAASRDFPARSQEQNPPEDDTHHLPSVEHDSALALALQQESKEEALASLEDAGLFFCQI
CQKDLTAMNTLRREQHVNRCLDEMEEAQMSSSSKPVVPECPICGKQFQTPQSRVSHLKRC
AVEMDVPPNLLLQAVQLQVATLGDAALQCPSNQPSRAKRKGPSTEDSKKTQKKAKTEPKD
EDLQVAIAMSRSLLEQENQEQAKSVTNVKAVAAFPIKWKPGSDKKRRRKGASAPPPLLLQ
DPEKAQKRIQERVAMMLTEEVEFPPTPQLPISRILEDESGKAAWLMPLSKAKECFLWKSS
ALTGPCDPESFYTAALTPPIVPWKPVQNKPENLQPSVGSHRPEVSQQTQPDLNSQGPTCT
KVGGQTSDESKPGPEGDGQFLSPSQKDIQTLQDLVELAREGLTLTQWNLDTGHVQAAEQP
GEDLTPSDPPHSGFVLPSKEKSLLRSSSKRSSLRLLAQDFGAMVNNPHLSDVQFQVDSGD
VLYAHLFVLYARCPAAAQAVHSEGLVVEEDGAAPTHRVLLSDVSAEAVAAFLRYLYAADT
NFPPGLRPQLQALAARFGVRQLMAECENNPGESQVSSGVDSEDDLISVRDDEDCEDRAEN
FQDLLKSMWVGEDEEEVAMLSPECQKEDDSEMGEQELEEIYEFAATQRKMAQGEREVSKG
THCSICSDTEAVQGTNRQTEQEEVKRPESASISNILKDLRDGNGVERSKCDLSAQEEKMQ
NINRCKGMNDPQTTIVPHHSEPQKWDGTSHGANEGGTVGGCENVKDSRSPQVSHDKADHC
EEQFPGFQGDTDINDSYERLFSASQGDHCEPSPVKEVTKKSGKSPSEKHVGLNDSLLFSK
SQKDCSPCKNGFCGNPSPQPYVSLFPALGSSPASPKSEGKFARECVSTPKQNKKEKSFPF
DEIHSQKAKELGAALRKEILFSPAELPHSESNKHTHVPVLSSPGRTRDDQGRAQGIKEGD
VIVLSSSDDEMEFQQSERLPESDSALKKMETPGHLKCTDVEQGPEIPKPDPNSSVPETEQ
RSAQVLHGNTDSVCVSVSHVKVSPEFPLSRQTGACTEIKQSPNPSPRKRLSNEMSPGTDS
SWLVPGTPVLSKSRSFATQTQVTSSNSLKGPGSKLSTKNLAVGNSNHEMTGNLIKVHETT
LSDKHLPVENSASGRSPPSSPATESFSKNPLPVSPVDPVLLSPGYTNTESRCASISGLPT
LVPPCQQQPLEDNINISVVELEDSDREESLPSLGSSVLLCEEPPIPVPDCWHIGYLSPAR
GDSHNSGRISRAKTSMASSRSPGSWQEQGESPVQVQGIQGSTPLQGSPAGRRTTLHCPEK
SPIEPCSSVGSRASYLDSKIWDDWNGEEKEDELPEILPLSQRLAAAAGASRTDPVKTPES
SCQENNRSPSTPVTPMPAYSIMETPELKKELSRFGVRALPKRQMVLQLKEIFQYTHRDGD
SDFEDEIPYSQPLPQKSPAKRPRQAKTGRAAGRNRAGAPRVVGKRKQLAKASAVLPRDEA
DGASCGTGCAAPKDRTKVTHHPTGAKEQERPSVSLAADGEELPASQESAGSSVDGSDISF
GSQSSFVNGFETCAFESEEEEEEFPASQAAAREEEKLEAVRCYIRSNTALYNRILFYEPI
ELADLHAELKQNGIKISKAKLLDFLDSQCITSTMARARKEQEQKRKENRKQRRRYRVKSA
PTR
NT seq
5592 nt
NT seq
+upstream
nt +downstream
nt
atggatgaacaggacaatgattttaaagagttgtgggcaaatattttgagtagggcaaag
aaaaaggctggagatgctgaggcaacaaagagggctcagaacaggccaaagagcaccaca
acacgaagcaaattaagaagaggcaaagctgctgctaagagccaaacccatcatcactta
ccagcagtgaaagagacaaacttgcctcgagatttgggtccaaaggagcaaacactggtg
cacgaagaagatggtgatgctgcagcctgtgagactgcacaggaggatggagaaagaagc
cctctccctgccagccagctgagcacagagaccactgagtgtagccagaggtctctgaca
gtaaatcctccaagtgtctgttcccagactaccttacccttccttcctgctactcctcca
ggaacctgctcctcacccaccccaaaggtgcgggtggcagagctggtggtggagagaatg
cagcagttcaagagggtggcacccgagcagctgaaacacagttcggatgggagcgtgcca
aaggctgcagccagcagggatttccctgccaggagccaggagcagaaccctcctgaagat
gatacccaccatctcccatctgtggaacacgacagtgctctggctttggctcttcagcag
gaatccaaggaggaagccctggcaagcctggaagatgcaggcttgttcttctgtcagatc
tgccagaaggatctcacagccatgaacaccctgcgacgagagcagcacgtcaacaggtgt
ctggatgagatggaagaagcacagatgtcatcctccagcaaaccagtggtccctgagtgt
cccatctgtgggaagcagttccaaaccccccagagccgagtcagtcacctgaaacgctgt
gctgtggagatggatgtgcctcctaatctgcttcttcaggcagtgcagttgcaggtggcc
acgcttggtgatgcagctcttcagtgtcccagcaatcagcccagcagggcaaagcggaaa
ggcccctccaccgaggactcgaagaaaacacagaagaaggccaaaacagagcctaaggat
gaagatttgcaggttgccatagcaatgtcacgctctctgttggagcaagaaaatcaggaa
caagcaaaatcagttacaaatgtgaaagcagtggctgctttcccaatcaaatggaagcca
ggatcagacaaaaaaaggcgtagaaaaggcgccagtgcccctccacctctgctgctccag
gacccggagaaggcccaaaagaggatccaggagcgagtagctatgatgctgacggaagag
gtggaattccctcccacccctcagctgcccattagtaggattctggaggatgaatctgga
aaagcagcctggctcatgccattgtccaaagccaaggaatgctttttatggaagagcagt
gcgctgacaggaccctgtgaccccgaatcattctacactgcagccttaacccctccaatt
gtaccctggaaacctgtgcagaataagccagagaaccttcagccatcggtggggtctcac
cggccagaagtgtcccagcaaactcagcctgacctcaattctcagggacccacttgcaca
aaggttggaggccaaacttctgatgaatccaagccaggtcctgaaggagatgggcagttt
ttatccccgagccagaaggacattcagaccctgcaggatctggtggagttggccagggaa
ggactcacccttactcagtggaatcttgacactggccatgttcaggcagcagagcagcca
ggagaagatctgactcccagtgatcctccacatagtggctttgtgctcccatccaaggag
aagagcctcctcaggagcagcagtaaaagatcttctctcaggctgctggctcaagatttc
ggtgccatggtcaacaacccccacctgagtgatgtccagttccaggtggacagcggggat
gtcctctacgcccacctgtttgtgttgtacgcgcggtgcccggcggcggctcaggctgtg
cacagcgaggggttggtggtggaggaggacggggctgcaccgacgcaccgggtgctgctg
agtgatgtgtcggccgaggctgtggctgccttcctgcggtacctctatgctgctgacacc
aacttccctcctgggctgcggccccagctgcaggctctggctgccaggtttggtgtgagg
caactgatggcagagtgtgaaaacaaccctggagagagccaggtgtcctctggagtagat
tcagaagatgaccttatctctgtgagggatgatgaagattgtgaggacagagctgagaac
ttccaagacctcttgaagtccatgtgggtgggtgaagatgaggaagaagtagctatgctg
agccctgagtgccagaaggaggatgacagtgagatgggagaacaagagctagaggaaatc
tatgagtttgctgcaactcagagaaagatggctcagggtgaaagagaggtgagcaaggga
acacactgcagcatctgcagtgacaccgaggcagtccaaggtacaaaccggcaaactgag
caggaagaggtaaagagacctgagtctgcttcaataagcaacatcctcaaagatctgagg
gatggcaacggtgtggagagatctaaatgcgacttgtctgcacaagaagagaagatgcag
aatataaacaggtgcaagggcatgaatgatccacagaccactattgtgcctcaccacagt
gaacctcagaaatgggatggaacatcccatggtgctaatgaaggggggactgttggggga
tgtgagaatgtgaaggattccaggtcacctcaggtctcacatgacaaggcagatcactgt
gaagagcagtttcctggtttccagggtgatactgatataaatgacagctatgaacgtttg
ttttctgcctctcagggagatcactgtgagccttccccagtgaaagaagttaccaaaaaa
tcaggaaagtcccctagtgaaaaacatgttggtcttaatgattcacttctgttcagcaag
tcacaaaaagactgctctccatgtaagaatggattttgtgggaatccaagtccccagccc
tatgtgtccctttttcctgctcttggctcttcacctgcatctccaaaatcagagggaaag
tttgccagggaatgtgtgtcaacaccaaagcaaaacaaaaaggaaaaatcattcccattt
gatgaaatacactcccagaaagccaaggagctgggtgctgcattgagaaaggagatctta
ttttctccagcagagcttcctcacagtgaatcaaacaagcacacacatgtcccagtgttg
tcatcaccaggcaggactcgggatgatcagggcagagctcaagggatcaaggagggtgat
gttattgttttatcttcttctgatgatgaaatggagtttcaacaaagtgagaggttgcca
gagtctgactctgctctgaaaaaaatggaaacccctgggcatctgaaatgtacagacgtg
gaacaaggtcctgagatacctaaacctgaccctaactcatcagttcctgaaacagagcag
aggtcagcccaggtcttacatggcaatacagactcagtatgtgtaagtgtctcccatgta
aaggtgtcccctgaattccctctcagtagacaaacaggtgcttgtacagagatcaaacag
agtccaaacccaagccctaggaaaaggctcagtaatgaaatgtctccaggcacagacagc
tcctggcttgtgccaggaacaccagttctgagcaaaagcagaagcttcgcaacacagact
caggtcacaagtagtaattctttaaagggtccaggatctaaactcagcacaaagaactta
gcagtaggcaatagtaaccatgaaatgactggaaatttaataaaagttcatgaaacaacg
ttgtcagacaaacatttgcctgtggagaactcagccagtggaaggagcccacccagcagc
ccagcaacagaatccttttccaagaacccccttccagtttctccagtagatccagttctc
ctctcccctggctacaccaacacagaaagcagatgtgccagtatctcaggtttgcccaca
ctggtgcctccgtgccagcagcagccactggaagataacatcaacatcagtgtggttgag
ttggaggacagtgacagggaagaaagtctgccttctctgggtagcagtgtcctgctgtgt
gaggagcccccaatccctgttcctgactgctggcacattgggtatctgtcgccagccaga
ggtgacagccacaactctggccggatcagtcgtgcaaagaccagcatggccagcagccgc
agccctggctcttggcaggagcagggggagagcccagtccaggtgcagggaattcagggc
agcacccctctccaaggaagtcctgctggcaggagaacaactttgcactgccctgagaag
agccctattgagccttgttcgtcagtgggcagcagagccagttacctggactccaaaatc
tgggatgactggaatggagaagagaaggaagatgaacttccagagattcttcctctgtct
cagaggttggcagctgcagcaggggccagtcggacagatcctgtcaagactcctgaatct
tcctgtcaggagaacaacaggtcccccagcactccagtgacacccatgccagcttattcc
atcatggagaccccggagctgaagaaggagctgagcagattcggtgtccgtgctctccca
aaacgccagatggtgttgcagctgaaggagatattccagtacactcaccgggatggggac
tctgactttgaggatgaaatcccctattcccagcccctcccacagaagtccccagccaaa
cggccgaggcaggcaaagacaggccgggctgcaggcaggaatcgcgccggcgccccaagg
gttgtgggcaagaggaaacagcttgccaaggcttctgcagtgctccctagggatgaggct
gatggtgcatcctgtggaacaggctgtgctgcacccaaggacagaactaaagtaacacat
cacccaacaggagccaaagaacaggaaaggccatcggtgtccctggcagctgatggcgag
gagctcccggcatcccaggagtcagcaggttcttcggtggatggaagtgacatctccttt
ggttcacagagttcctttgtaaatggatttgaaacctgtgcttttgagtctgaggaggag
gaagaggaatttccagcatctcaagcagcagctcgggaagaggaaaagctggaggcagta
aggtgctacatccgctcaaacacagccctgtacaacaggattctcttctatgagcccatc
gagctggctgatctgcatgcagagctcaaacagaatggcatcaaaatttccaaggcaaag
ctgctggactttctggattctcagtgcatcacatctaccatggccagagcccggaaggag
caggaacagaaaaggaaggagaacagaaaacagagaagacgataccgagtgaagtccgct
cctacccgctga
DBGET
integrated database retrieval system
