Prevotella histicola: J5A62_06725
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Entry
J5A62_06725 CDS
T07498
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
phis
Prevotella histicola
Pathway
phis03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
phis00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
J5A62_06725 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phis03021
]
J5A62_06725 (rpoC)
03400 DNA repair and recombination proteins [BR:
phis03400
]
J5A62_06725 (rpoC)
Enzymes [BR:
phis01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
J5A62_06725 (rpoC)
Transcription machinery [BR:
phis03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
J5A62_06725 (rpoC)
DNA repair and recombination proteins [BR:
phis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
J5A62_06725 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
SSrecog
Motif
Other DBs
NCBI-ProteinID:
QUB83499
LinkDB
All DBs
Position
1:complement(1646384..1650757)
Genome browser
AA seq
1457 aa
AA seq
DB search
MAFKKDNKVKSNFSKITIGLASPEEILENSFGEVTKPETINYRTYKPERDGLFCERIFGP
TKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERAGHIELVVPVAHIWYFRSLPNKI
GYLLGMPTKKLDAVIYYEKYVVIQPGVVEGMKNADSEEDLNGSHKFDLLSEDEYLDILDN
KLPEGNDRLDDSDPKKFIAKMGAEAVYDLLSSIDLDRLAGELRDRATTDSSQQRKTEALK
RLQVVEGFRQSIGVNKPEWMIMKIIPVTPPELRPLVPLDGGRFATSDLNDLYRRVIIRNN
RLKRLMEIKAPEVILRNEKRMLQEAVDSLFDNSRKSSAVKSESNRPLKSLSDSLKGKQGR
FRQNLLGKRVDYSARSVIVVGPELKMGECGLPKLMAAELYKPFIIRKLIERGIVKTVKSA
KKIVDRREPVIWDILENVMKGHPVMLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLACTAF
NADFDGDQMAVHLPLSNEAVLETQILMLQSHNILNPANGAPITVPSQDMVLGLYYITKIR
PGAKGEGLSFYGSEEAIIAYNEKKCDLHAQVKVVVDDLVDGKIQKRMVETSVGRVIVNQI
IPTEIGFFNGIISKKSLRGLIADVIKAVGMARACEFLDGIKNLGYHMAYVAGLSFNLDDI
IVPVEKKDIVGKGQDEVDQVKANYEMGFITDKERYNQVIDAWTHVNNNLKQSVMKHMTEA
DQGFNAVYMMLDSGARGSADQIAQLAGMRGLMAKPQKAGAEGAQIIENPIISNFKEGMSV
LEYFISSHGARKGLADTAMKTADAGYLTRRLVDVSHDVIITEEDCGSLRGLECRALKNGD
ETIATLYERILGRVSVHDVINPTTGDIIVAAGEEITEAKAQAIENSPIEMVEIRSVLTCE
SKKGVCKKCYGRNLATARMVQMGEAVGVIAAQAIGEPGTQLTLRTFHAGGVAGNAAANAT
ITAKNDAKIEFDELRTVPFVDDDDRECQMVVSRLAEIRFVDPNTGIVLLTDNVPYGSSLY
FKSGDKVKKGDVICKWDPFNAVIVSEYAGTLRLHDVVEGVTYKAETDDATGLTERIITDS
RDKTKVPTVDVVKAGAKKGADGQYAAADILGTYNLPVGGHLEQILQDGAEIKTGMTLVKI
PRSVGGAGDITGGLPRVTELFEARNPSNPAVVSEIDGEVTMGKVKRGNREIIITSKTGEQ
RKYLVSLSKQILVQEHDAVRAGTPLSDGIITPADILSIMGPTAVQEYIVNEVQDVYRLQG
VKINDKHFEIIVRQMMRKVRIDDPGDTTFLEQELIDKLDFAEENDRIWGKKVVTDPGDSE
NCYKGQILSVRKLRDENSSLKRRDLKLVQVRDAVQATATQILQGITRAALGTKSFMSAAS
FQETTKVLNEAAIRGKSDNLEGMKENVICGHLIPAGTGLRQWQKLVVGSQEEHERMEANR
KNVIDYANQEAAEVTQE
NT seq
4374 nt
NT seq
+upstream
nt +downstream
nt
atggcttttaagaaagataataaagtaaagagtaatttcagcaaaattactatcggactg
gcttcaccagaagaaatccttgagaattcttttggcgaagtgaccaagcctgaaaccata
aactatcgtacctataaaccagaacgcgatggtttgttctgtgaacgtatctttggtcca
acaaaggactatgaatgtgcttgtgggaaatacaagcgtattcgttataaaggtattgtt
tgtgatcgttgtggtgttgaagtaactgagaagaaggtacgtcgtgaacgtgctggacat
atagaattagtcgttcccgttgcccatatttggtatttccggagcctcccaaataagatt
ggctaccttttaggtatgccaacgaagaagctggatgctgttatttactatgagaagtat
gttgtcatccaaccaggtgtcgtagaagggatgaagaatgctgactctgaagaggacttg
aatggatctcacaagtttgatcttctttctgaggatgaatatttggatattcttgataat
aagcttccagaaggtaatgatcgtttagatgattctgatccgaagaagtttattgctaag
atgggagcagaggcggtctatgatttgctttcaagcattgatcttgatcgtttggctggt
gagttacgtgatcgtgcgacaacagattcaagtcaacagcgtaagaccgaggctttgaag
cgtctacaggttgtagaaggcttccgccagtctattggtgtaaacaagccagagtggatg
attatgaagattatcccagtcactccaccagaactccgtccattagtcccattagatggt
ggtcgttttgcaacttcagatctcaatgacctttatcgtcgtgttatcattcgtaataat
cgtttgaagcgacttatggagattaaagctcctgaggttattcttcgtaatgagaagcgt
atgcttcaagaagctgtcgattctctcttcgataatagtcgaaagtcatcagctgttaag
agtgagagtaatcgtccattgaagtctctttctgactcattaaagggtaagcagggacgt
tttcgtcagaacctgctaggtaaacgtgtcgactattctgcacgttcagttatcgttgtt
ggccctgagttgaagatgggtgagtgcggtcttcctaagttgatggcagcagagctttac
aagccattcatcattcgtaagcttattgagcgcggtatcgtgaagactgtaaagagtgct
aagaagatcgtagatcgtcgtgagcctgtaatttgggatatcctcgagaatgtgatgaag
ggacaccctgtaatgttgaaccgtgcgccgacacttcaccgtttgggtattcaggcattc
cagcctaaactcattgagggtaaggctattcaacttcatccattggcatgtacagcattc
aatgcagactttgatggtgaccagatggctgttcacctcccattgagtaatgaagctgtt
ctggagacacagatattgatgctacagagccacaatattctaaatccagcaaatggtgcg
cctattactgtcccttcacaagatatggtacttggtctctattatatcaccaagattcgt
ccaggtgctaagggggaaggcctttctttctatggatcagaagaagcaatcatagcttac
aatgagaagaagtgtgaccttcatgcccaagtaaaggttgttgttgacgatcttgtagat
ggtaaaatacagaagagaatggttgagacctctgttggtcgtgttatcgtcaaccagatt
atccctaccgagataggtttcttcaatggtattatctctaagaagtcacttcgtggtctt
attgccgatgttattaaagctgttggtatggcacgtgcttgtgagttcctcgatggtata
aagaacctcggttatcatatggcttatgttgcaggtctatcttttaacttggatgatatc
atcgtcccagtagaaaagaaagacattgtaggtaagggacaagatgaggttgatcaggtg
aaggctaactatgaaatgggtttcatcaccgataaggaacgttacaatcaggtgattgat
gcttggacacacgttaacaataaccttaagcaaagtgtgatgaagcatatgacagaggca
gaccagggattcaatgcagtatatatgatgcttgactctggtgctcgtggatctgctgat
cagattgctcagcttgcgggtatgcgtggtcttatggctaaaccacaaaaagctggagct
gaaggtgcacagattattgaaaatcctatcatttcaaactttaaagaaggtatgtcggta
ttggagtacttcatatcttctcacggtgctcgtaaaggtttggcagatactgccatgaaa
acagccgatgcaggatatttgactcgtcgacttgttgatgtttcacatgatgtgatcatc
acagaggaggattgtggttctcttcgtggacttgagtgtcgtgctttgaagaatggtgat
gaaaccatagcaactctttatgagcgtatcttgggacgtgtctctgttcacgatgtgatt
aatcctacaactggtgatattattgttgctgctggtgaggagatcacagaggctaaggcc
caggctatagagaactctccaattgagatggtagagattcgttctgttctaacttgtgaa
agcaagaaaggtgtatgtaagaagtgttatggtcgtaaccttgccacggctcgtatggta
cagatgggtgaagctgtcggtgttattgctgctcaggctattggtgagccgggaactcag
cttactcttcgtacgttccatgctggtggtgtcgcaggtaatgctgctgctaatgcaaca
attacggcaaagaacgatgctaagatagagtttgatgagctccgtacagtcccgtttgtt
gatgacgatgatagggaatgtcagatggttgtaagccgtttggctgaaattcgtttcgtt
gatccaaatacaggtattgttctccttacagataatgtgccttatggtagttctctttac
ttcaagtctggtgacaaagtgaagaagggcgatgtaatttgtaagtgggacccattcaat
gcagttattgttagtgaatatgctggtacgcttcgcttacatgatgtagtagaaggtgtt
acttataaggcagagactgatgatgcaacaggtcttacagaacgtattataaccgactct
cgtgacaagaccaaggttccaactgttgatgttgttaaggctggtgcaaagaaaggtgca
gatggtcaatatgcagctgctgatattcttggtacttacaaccttccggtaggtggtcac
ttagagcagattctgcaggatggtgcagagattaagactggtatgacacttgttaagata
ccacgttctgtaggtggtgctggtgacattactggtggtcttccacgtgttaccgagctc
tttgaagcacgtaatccatctaacccagctgtcgtttctgagattgatggtgaggtaaca
atgggtaaggttaagcgtggtaatcgtgagattattattacctctaaaacaggtgaacag
cgtaagtatctagtaagtctttcaaagcagattcttgtacaggaacatgatgctgtgcgt
gctggtactccgttgtctgatggtattatcacaccagctgatatcctatctattatggga
cctaccgcagtacaagagtatattgtgaatgaggttcaggacgtttaccgtctacagggt
gtgaagatcaatgataagcactttgagattatcgtccgtcagatgatgcgtaaggttcgt
attgatgatccaggtgatacaacgttccttgagcaggagttgattgataagcttgacttc
gcagaagagaatgatcgtatctggggtaagaaggttgttactgacccaggagattctgag
aactgttataagggacaaattctttccgtgcgtaagttgcgtgatgagaattcaagtctt
aagcgtcgtgaccttaaacttgttcaagtgcgtgatgctgttcaagcaacagcaactcag
atcctccagggtattactcgtgcagccctcggtacgaagagcttcatgagtgcagcttct
ttccaggagactactaaagtcctcaacgaggctgctatccgtggtaagagtgacaatctt
gagggtatgaaggagaacgtaatctgtggtcacctcatccctgcaggtacaggtcttcgc
cagtggcagaagcttgttgtaggctcacaggaagagcatgagcgtatggaagctaacaga
aagaatgtcatagactatgctaatcaagaggcagcagaagtgacacaggagtaa
DBGET
integrated database retrieval system
