Guptibacillus hwajinpoensis: LC071_00160
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Entry
LC071_00160 CDS
T09276
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
phj
Guptibacillus hwajinpoensis
Pathway
phj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LC071_00160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phj03019
]
LC071_00160
03009 Ribosome biogenesis [BR:
phj03009
]
LC071_00160
Enzymes [BR:
phj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LC071_00160
Messenger RNA biogenesis [BR:
phj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LC071_00160
Ribosome biogenesis [BR:
phj03009
]
Prokaryotic type
rRNA helicases
LC071_00160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WLR59869
LinkDB
All DBs
Position
22888..24375
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AA seq
495 aa
AA seq
DB search
MKKFQDLGLSNTLLEAVNQMGFEETTPIQAGTIPLALEGNDVIGQAQTGTGKTAAFGIPM
IEKIDTSLSHVQGIILAPTRELAVQVAEELNRIGQAKGVRALPIYGGQSIVHQIKALKKR
PQLVVATPGRLIDHMERKTIRLSEVSFVVLDEADEMLNMGFIEDIEKILKGVPEKRQTLL
FSATMPKRIAILAEKFMSNPETVRTKSKEMTVPSIEQHYYEVRDSKKFDILCRLLDTQSP
ELAIVFARTKKRVDEVSEGLKKRGYMAEGIHGDLPQGKRDQVIKQFKDSTIDIMVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLASTFITPREYDHLKVIEKITK
KSMQKRTIPSFAEAMEGQQQMAIQQLQSTIEEQDHSVYRSSAEQLLDDHDSVTLLSAALK
LLTKEPDTTPVKITEIAPLRAKKAHGRGGSGGGNRNRNRSNDRGGRKGGSGGGYRGDRNS
GGANKRRKFNDKGNK
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaaatttcaagatctaggtttaagtaatacgctgctagaagcagttaatcaaatg
ggattcgaagaaacaacaccaattcaagcaggaacaattcctctagcgcttgaaggcaac
gacgttatcggtcaggctcaaactggtactggtaaaacggctgcttttggtatcccaatg
attgaaaagatcgacacttctctatctcatgtacagggtatcattcttgcgccaacacgt
gagcttgctgtacaggttgcagaagaattgaaccgtattggtcaagcaaaaggcgtgcgt
gcccttcctatatatggtggacaaagcatcgttcaccaaatcaaagcacttaaaaagaga
cctcagctcgtagtagcgacgccgggtcgtctaattgatcatatggaacgtaaaacaatt
cgtctatctgaagtttcttttgttgttcttgacgaagctgatgaaatgcttaacatgggc
ttcatcgaagatatcgaaaagattctaaaaggtgttcctgaaaagcgtcaaacgctttta
ttctctgcgactatgccgaaacgcattgcaattcttgcagagaaattcatgagcaatcct
gaaacagttagaacgaaatcaaaagaaatgactgttccttccattgaacagcattactat
gaagttcgtgattctaagaaattcgatattctttgtcgccttcttgatactcagtctcct
gagcttgcaattgtgtttgcaagaactaagaaacgcgttgatgaagtatctgaaggactt
aagaaacgtggatatatggctgaaggaattcacggtgaccttccacagggtaaacgtgat
caggttattaaacagtttaaagacagcacaatcgatatcatggtagcgactgacgttgct
gcacgtggtctagacatcagtggtgttacacacgtttataactttgacattcctcaagat
ccggaaagctacgttcacagaatcggtcgtactggccgtgcaggtaagtcaggtcttgct
tcgacatttattactccacgtgagtacgatcaccttaaagtgatcgagaaaattacgaag
aagtctatgcaaaaacgtacgatcccaagcttcgctgaagcaatggaaggccagcaacaa
atggcaattcaacagcttcaaagcacaattgaagagcaggatcattcagtataccgttca
tcagctgaacaacttctcgatgatcacgattcagtaacgcttctttctgcagctcttaag
ttgctaacaaaagagccggatacaactccggttaaaattactgaaattgcaccacttcgt
gctaaaaaggctcatggccgtggcggcagtggcggtggaaaccgcaaccgtaaccgcagt
aatgatcgcggaggccgtaaaggtggaagcggtggcggatatcgcggagaccgcaacagc
ggtggcgctaacaagcgtcgtaagttcaacgacaaaggaaataaataa
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