Pseudalkalibacillus hwajinpoensis: LC071_08070
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Entry
LC071_08070 CDS
T09276
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
phj
Pseudalkalibacillus hwajinpoensis
Pathway
phj02020
Two-component system
phj02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
phj00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LC071_08070 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LC071_08070 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phj03021
]
LC071_08070 (rpoN)
Transcription machinery [BR:
phj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LC071_08070 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
LacI
HTH_21
MutS_III
PBP_sp32
MarR
Motif
Other DBs
NCBI-ProteinID:
WLR61248
LinkDB
All DBs
Position
complement(1600413..1601708)
Genome browser
AA seq
431 aa
AA seq
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MELGLIQKQTTKLVMTTQLHQAISILQYSTVELLEYVKEQALENPLIELHSPSWDGGVRS
SKRSYDTGLKKDPLEYAETKKSLHDELHDQARCLHFPRKREAIVHYLIDNIDESGYLRIN
ETEVMKYLGVEHFEITEAIREIQLLDPPGIGARSLSECLFLQLNESGEIFELARDLVSHH
LKALAEKKYRELSREFHVPVDQIQRAADIVADLDPRPGSKWGIDKPSYIVPDVMIEEKNG
RFSIALLDDDLPAMKVSNAYRSFKNNEAEEYLKDKYQQVSWLLKSIEQRKQTLRAIMGVF
IVHQQNFLRNGISELSPITLKEVAMEADVHESTVSRAIKSKYVQTPHGLFALKDLFTSKL
SSESGEAASSSSVKLFIKELVENENKMKPLSDQKIVEALHIQKGIEVSRRTIAKYRDELK
ILSSSKRKRFS
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atggaattaggattgatacaaaagcagacaacgaaattagtcatgacaacccagttgcat
caagcgatttctatactccaatattctacggtcgaattactggagtacgtgaaagaacag
gctcttgaaaatccattaattgaattacactcgccttcatgggatggtggcgttcgttct
tcgaaacgctcttatgatacgggacttaaaaaagatccactcgaatacgcagaaacaaaa
aaaagtttgcatgatgagctacacgatcaggcgaggtgcctacactttccacgtaaaagg
gaagctattgtgcattatttaattgataatattgatgaaagtggttacttaagaataaat
gagacggaggtaatgaaataccttggtgtcgagcactttgaaattactgaagccattaga
gagattcaattacttgacccaccaggtataggggcgcgttctctttccgaatgtctcttt
ttacagttaaatgagtcgggagaaatttttgagcttgctcgagatcttgtttcccatcat
ttgaaagcgttagcagaaaagaaatatcgtgaactctcgagagaatttcatgttcctgtc
gaccagatacagagggctgcagatatagtagcagatctcgatcctcgtccaggatcaaag
tggggcattgataaaccatcctacattgtgccagatgtcatgatagaagagaaaaatggg
agattctctattgcattacttgatgacgatttaccagcaatgaaagtgagcaatgcctac
cgttcttttaaaaataacgaagcggaagagtatctaaaggataaataccagcaagttagc
tggttattaaaaagtattgagcaaagaaagcaaacgcttcgtgcaatcatgggcgttttt
attgttcaccaacaaaattttttgagaaatgggataagtgagctttctccaataaccttg
aaggaagtagcgatggaagcagatgttcacgagtccacagtaagtcgagcgattaaaagc
aaatacgtccaaacaccacatggtctttttgccttaaaggacttatttacttccaaactg
tctagtgaatctggagaagctgcttcttcctctagtgtaaagctatttattaaggaactt
gtggagaatgagaataagatgaaaccattatcagatcaaaaaattgtagaagctcttcat
atccagaaagggattgaagtatcgaggcgtacgattgcaaagtatcgagatgagttaaag
atcttaagctcatcgaaacgaaaacgattttcgtag
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