Guptibacillus hwajinpoensis: LC071_12530
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Entry
LC071_12530 CDS
T09276
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
phj
Guptibacillus hwajinpoensis
Pathway
phj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
phj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LC071_12530 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phj03021
]
LC071_12530 (rpoC)
03400 DNA repair and recombination proteins [BR:
phj03400
]
LC071_12530 (rpoC)
Enzymes [BR:
phj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LC071_12530 (rpoC)
Transcription machinery [BR:
phj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LC071_12530 (rpoC)
DNA repair and recombination proteins [BR:
phj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LC071_12530 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
WLR58087
LinkDB
All DBs
Position
2502765..2506385
Genome browser
AA seq
1206 aa
AA seq
DB search
MIDVNKFEYMKIGLASPAKIRSWSRGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRIRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFASYVVTEAGDTPLEKKQLLSEKEYRAYREKYGKTFSAEMGAEAIRRLLF
DIDLDKEVDILKEELKTAQGQRRTRAIKRLEVLEAFRGSGNNPSWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPHLKMYQCGLPKE
MALELFKPFVMKELVSKGLAHNIKSAKRKVEKVHPEVWDVLENVIKEHPVLLNRAPTLHR
LGIQAFEPILVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTMEREGAIGEGSVYKDTNEALIAYQNGFAHLHSRVAIP
AASLNKSAFTEEQNKQLLVTTVGKLIFNEILPESFPYINEPTTNNLEIATPENYFLPHGV
NVKEEIAQRELISPFKKGILGKIIAEVFKRFKVTETSRMLDRMKDLGFKFSTKAGITVGV
ADVVVLAEKQEIVHEAEEKVEKVLKQFRRGLITDDERYDRVIAIWSSAKDRIQEKLMNRL
EKDNPIFMMSDSGARGNASNFTQLAGMRGLMANPSGQIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVREDDCGTDRGLEVSAIKNGNELIEGLF
DRLVGRVAFKKVRHPETNEVLVEKNNLITEDIATEIVEAGIENVYIRSAFTCSTSHGVCK
KCYGRNLATGTRVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQELF
EARNPKGQAVVSELDGKVIDLAEVKEKKEIVVQGETETRNYPVPYGARLKIVVGDEVKAG
QPLTEGSIDPKQLLTISGIDGVQEYLLAEVQKVYRMQGVEIGDKHVEVMVRQMMRKIRVI
DAGDTEVLPGSLVDIHQFKGVNRKVLKQGGLPATGRPVLLGITKASLETESFLSAASFQE
TTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMQRYRRINVAGEAQEAEELLEQEES
ALVSQE
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
ttgatagatgtcaataaatttgagtatatgaaaatcggtctggcgtcaccggctaaaatc
cgctcttggtcaagaggagaagttaagaagccagaaaccattaactaccgtaccttgaag
ccagagaaagatggtcttttctgtgagcgaatctttggacccacaaaagactgggaatgt
cattgtgggaaatacaaacgtatccgttataaaggagtcgtttgtgatcgctgcggtgtt
gaagtaacacgtgcaaaagtccgtcgtgagagaatggggcacatcgagcttgctgctcct
gtctctcacatctggtactttaaaggcattccaagtcgcatgggacttgttctcgacatg
tctccgcgtgcattagaagaagttatttatttcgcttcttatgttgtcactgaagctgga
gacacaccgcttgagaagaaacaacttctttctgaaaaagaataccgtgcataccgtgaa
aagtacggcaaaacattctctgcagaaatgggtgcggaagcaatccgcagactactgttt
gatatcgaccttgataaagaagtagatatccttaaagaagagcttaaaactgcacaaggt
caacgcagaactcgtgcgattaaacgtcttgaagtacttgaggcatttcgtggttcagga
aataacccgtcatggatgatcttagatgttcttccggttattcctcccgagcttcgtcct
atggtacagcttgacggcggacgatttgcgacatcggatttaaacgatctgtatcgtcgc
gtaattaaccgcaataatcgtttgaaacgtttgttagatcttggtgctcctagcattatc
gtgcagaatgagaagcgtatgcttcaagaagctgtcgatgcccttattgataacggccgt
cgtggtcgtccagtaacaggtcctggtaaccgtcctttaaaatctctttctcacatgctg
aaagggaaacaaggtcgtttccgtcagaatctactaggtaagcgtgttgactattcaggt
cgttccgttatcgttgtaggtcctcacttgaagatgtatcaatgtggacttccaaaagaa
atggcgcttgaattgttcaaacctttcgtaatgaaggagcttgtatcaaaaggccttgca
cacaacattaagagtgcgaaacgtaaagtagaaaaagttcatcctgaagtttgggacgtt
ttggaaaacgtaattaaagaacatccagttcttctaaaccgtgcaccaacgcttcacaga
cttggaattcaggcgtttgaaccaattctagttgaagggcgcgcaattcgtcttcatcca
ctcgtatgtacagcttacaatgctgacttcgatggtgaccaaatggccgtccacgtaccg
ttatctgctgaagcgcaagctgaagcacgtatcttaatgcttgcagcacagaacattctt
aatccgaaagatggtaaaccagttgttacaccgtcacaggatatggttctaggtaactac
taccttactatggaacgtgaaggagcaatcggtgagggttctgtttacaaagatacaaat
gaagcattaattgcataccagaatggatttgcacatcttcattctcgcgtcgcaatccct
gctgcatcattgaataaatctgcctttactgaagagcagaacaagcaattgcttgtgaca
acggttggtaagttgatttttaacgaaattcttccggagtcattcccatatattaatgaa
ccgacgacaaataaccttgaaatcgccacaccggaaaattacttccttcctcacggagtg
aatgtgaaagaagaaattgctcagcgcgaattgatttcaccatttaagaaaggtattctt
ggtaagatcatcgccgaggtgtttaagcgattcaaagtgactgaaacgtctcgtatgctt
gaccgcatgaaagatcttggtttcaaattctcaactaaagctggtattaccgttggtgta
gctgacgtagtggtacttgctgagaaacaagaaattgttcatgaggctgaagagaaagtc
gaaaaagttcttaagcaattccgtcgaggtcttattaccgacgacgaacgttatgatcgt
gttattgcgatttggagtagtgcgaaagatcgtatccaggaaaaactaatgaatcgactc
gaaaaagataacccaatctttatgatgagtgattcaggtgcccgtggtaacgcatctaac
tttactcagctcgcaggtatgcgtggattgatggcaaacccatctggacagatcattgaa
cttccaatcaaatccagcttccgcgaaggtctaacagtgcttgagtactttatttcaaca
cacggtgcccgtaaaggtcttgccgatacggcccttaaaacagctgactcaggttacctt
actcgtcgtcttgttgacgtggcacaggatgttattgttcgtgaagacgattgtggtacg
gatcgcggccttgaagttagtgcgattaagaatggaaatgaattaatcgaaggattgttt
gaccgtcttgttggccgtgttgcctttaagaaagttagacatcctgagacgaacgaagtt
cttgttgagaaaaacaacctaattacagaagacatcgctactgaaatcgtagaagcaggt
attgagaacgtctatatccgctctgcctttacttgtagcactagtcatggcgtttgtaag
aagtgttatggacgtaaccttgcaacaggtactcgtgtagaagttggtgaagcagttgga
atcatcgctgctcaatcaatcggtgaaccaggtacacagttgacaatgcgtacattccac
acaggtggtgttgctggagacgatattactcagggtcttcctcgtatccaggagctattt
gaagcacgtaaccctaaaggtcaggctgttgtgtctgaacttgatggtaaagtgattgat
ttggctgaggtaaaagagaagaaagagattgtcgttcaaggtgaaactgaaacaagaaac
taccctgtgccatacggcgctcgtttgaaaatagttgtaggagatgaagtgaaggctggt
caacctctaactgaaggttcgattgaccctaaacaacttctaacaattagtggtatcgac
ggcgttcaagaatacctacttgcagaagtgcaaaaggtttatcgtatgcagggtgttgaa
attggcgataagcacgttgaagttatggttcgtcagatgatgcgtaaaattcgcgttatt
gatgcgggcgatactgaagtgttgccaggatcccttgtcgatattcaccagttcaaaggt
gttaaccgtaaagttcttaaacaaggtggcttacctgcaactggtcgtccagttcttctt
ggtattactaaagcatctcttgaaactgaatcattcttatcagcggcatccttccaggaa
acaactcgtgtcctaaccgatgcagctatcaaaggtaagcgtgatgagctacttggtctt
aaggaaaatgttattatcggtaaacttgttccggcaggtactggtatgcaacgttaccgt
agaatcaacgtagcaggtgaagcacaagaggctgaagagcttttagaacaagaagaaagt
gcgttagttagtcaagaataa
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