Pseudalkalibacillus hwajinpoensis: LC071_22025
Help
Entry
LC071_22025 CDS
T09276
Name
(GenBank) PolC-type DNA polymerase III
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
phj
Pseudalkalibacillus hwajinpoensis
Pathway
phj03030
DNA replication
phj03430
Mismatch repair
phj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
phj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LC071_22025
03430 Mismatch repair
LC071_22025
03440 Homologous recombination
LC071_22025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phj03032
]
LC071_22025
03400 DNA repair and recombination proteins [BR:
phj03400
]
LC071_22025
Enzymes [BR:
phj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LC071_22025
DNA replication proteins [BR:
phj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LC071_22025
DNA repair and recombination proteins [BR:
phj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LC071_22025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
DNA_pol3_a_NII
DNA_pol3_a_NI
HHH_6
tRNA_anti-codon
DEDDh_C
POT1
Motif
Other DBs
NCBI-ProteinID:
WLR59758
LinkDB
All DBs
Position
4258541..4262830
Genome browser
AA seq
1429 aa
AA seq
DB search
MDQDLNIRKERLQLLLQQISIPDKFVDYFRDGYISKLTVYKEARKWHFDFHFPDVLPFHV
YELFRSRLQDGLKHIATVTYGISTDSGGNEELAMAYWDNVAELMKEHSASLTAVLKSQTP
KISGNKLIVTVRNETEAAIARRKLSGPLSECYTHAGFPKYMLEVEVKASEQDYQKFVEQK
QQEDQSKMMEALIEKEKADKSSSKNVPDSLVIGYKIKEDPVPIETIQDEERRIAVQGYVF
HAETKELRSGRTLLTFKITDYTDSILVKMFSRDKEDVPILEAVRKGIWVKVRGGIQNDTF
VRDLVMIGNDLTEIKPDLRVDEAPEDEKRIELHAHTQMSQMDSVSSTGELIAQAAKWGHP
AIAITDHNVVQSFPDAYAAGQKNGIKVIYGLEADLVDDGVPMAYNEADRDLETGTYIVFD
VETTGLSAVYNKIIELAAVKLKDGEIVDKFERFANPHHPLSSTTIELTGITDDMVMNAPE
IEDVLKDFHEFMGDDILVAHNASFDMGFLNVGLRNIGLGEATNPVIDTLELARFLYPEMR
NHRLNTLCKKFDIDLTQHHRAIYDAEATGYLLWKLVKDALEREITNHNMLNDNMGQTGFQ
RTRPSHTIILAQNDVGLKNLFKLVSLSHIDYFYRTARIPRSKLEKYREGLLIGSGCDKGE
VFEGMMQKSPEEVEDIAKFYDYLEVQPPQNYMHLIEKELVQDEMALREIIGKIVKLGEKL
NKPVVATGNVHYLEPEDHIYRKILIKAQAGNPLNRQTLPQVHFRTTNEMLDCFHFLGADK
AKEIVVQKPQQVADLIDDIKPIKDDLFTPRIEGADEEMREMSYNMARSIYGDKLPTIVEE
RLEKELKSIIGHGFAVIYLISHKLVKKSLNDGYLVGSRGSVGSSFVATMTEITEVNPLPP
HYVCPSCKKSQFFDDGSVGSGFDLPDKSCEDCDVPLTKDGHDIPFETFLGFKGDKVPDID
LNFSGEYQPRAHNYTKELFGEDNVFRAGTIGTVAEKTAYGYVKGYMGDHDLHYRGAEIDR
LVSGCTGVKRTSGQHPGGIIVVPDYMDIYDFSPIQFPADDKTSSWKTTHFDFHSIHDNLL
KLDILGHDDPTVIRMLQDLSGIDPKTIPTDDAEVMKLFSGTESLGVTQDQIMCKTGTYGI
PEFGTRFVRQMLEDTKPSTFSELVQISGLSHGTDVWLGNAQELIQAGTCNLSEVIGCRDD
IMVYLIYKGLDPSLAFKIMEFVRKGKGLQEEWVAEMKKHDVPDWYIDSCLKIKYMFPKAH
AAAYVLMAVRIAYFKVHHPILFYAAYFTVRADDFDIDTMAKGSNAIRAKIEEINEKGLDA
SPKEKNLLTVMEIALEMSERGLRMQKVDLYRSKAAEFVVDGDSLIPPFNSLPGVGTNAAI
NIENSKEAGEFLSKEDLQQRSKISKTVLEYLDDHGCLEGLPDANQLSLF
NT seq
4290 nt
NT seq
+upstream
nt +downstream
nt
atggaccaggatttaaacataagaaaagaacgtctccaactgctccttcaacaaatatcg
attcctgataaattcgttgattattttagagatgggtacatttcgaaattaacggtatac
aaagaagctagaaaatggcattttgactttcactttccagacgttcttccttttcatgta
tatgagctatttcgcagtcgtctgcaagatggattaaagcacattgctacagtgacttac
ggcatctccacagatagtggaggaaatgaagaattagcaatggcatactgggacaatgtc
gctgaactgatgaaagagcattccgcatccctaacagctgtattgaaaagtcaaacgcct
aaaataagtggaaataagcttattgtaacggttcgtaatgaaacggaagctgcaatcgca
agacgtaagctatctggtcctttgtcagagtgttatacacacgctggatttccgaagtac
atgcttgaagtagaagttaaggcttctgaacaggattatcaaaaatttgttgaacaaaaa
caacaagaagatcaatctaaaatgatggaagccttgatcgaaaaagaaaaggcagataaa
tcttcaagtaaaaacgttccagattctcttgtcattggttacaagatcaaagaagatcca
gtaccgatcgaaactattcaggatgaagaacgacgcattgctgttcaaggttatgttttc
catgctgaaacgaaagagcttagaagtggacgaacgctattaacgtttaagataacggac
tacacggattctatccttgtgaaaatgttctcccgcgataaagaagatgttccgatttta
gaagcagtaagaaaaggaatctgggtgaaagtacgcggcgggattcagaatgatacgttt
gtacgcgatcttgttatgatcggaaacgatttaactgaaatcaaacctgatttacgagta
gatgaggcgcctgaagatgaaaagcgtattgagctacatgctcacacgcaaatgagtcaa
atggattccgtaagctcaacaggagaactgattgcacaggcagctaaatggggacaccct
gctatagccataacggatcataatgttgtacagtcatttcccgatgcgtatgcagcagga
caaaagaacggtataaaggttatctatggtttagaagcagaccttgtcgatgatggggta
ccgatggcatacaatgaagctgatcgtgaccttgaaacgggcacttatattgtttttgac
gtagaaacaaccggactttcggctgtttataataaaattattgagttagcagcagtaaaa
ttgaaagatggagaaatcgttgataagtttgagcgatttgctaatccgcatcatcctctt
tcctcaacaaccattgaactaacggggattacggacgatatggttatgaacgcccctgaa
atagaagacgtcctaaaagacttccacgaattcatgggagatgacattcttgttgctcac
aatgctagctttgatatgggcttcttgaatgtagggttacgtaatattgggttaggagaa
gctacaaatccagtaattgataccctcgagcttgctcgttttctatatccggaaatgcga
aaccatcgcttaaatacgctttgtaagaaatttgatatcgaccttactcagcaccataga
gcgatttatgatgcggaagcaacagggtatttattgtggaaattggtgaaagatgcactt
gagcgtgaaattacaaaccataatatgctgaatgataatatggggcaaactggtttccaa
cgtacgcgcccatcgcacacgatcatattggcgcaaaatgacgtaggtttaaaaaacttg
ttcaagctcgtttccctttctcacattgattatttctaccgaactgcacgtattccacgt
tctaagcttgagaaatatcgcgaaggtctgctgatcggttcgggctgtgacaagggtgaa
gtttttgaagggatgatgcaaaagtcacctgaagaagtagaagacatcgcgaagttttat
gactatcttgaagtgcagccacctcaaaattacatgcatttaattgagaaagaacttgtt
caagatgagatggcactgcgcgaaattattggtaagattgtaaagcttggtgagaagcta
aataagccagtcgtcgctactggtaacgttcattatctcgaaccagaggatcatatttat
cgtaaaattcttattaaagcacaggcgggtaacccattaaatcgccaaacgttacctcag
gttcattttagaacgacgaacgaaatgcttgattgtttccattttcttggggcagataaa
gcaaaggaaatagttgtacaaaaaccacagcaagtagccgacttgatcgatgatattaaa
ccaatcaaagatgatctattcacacctcgaattgaaggtgccgatgaagaaatgcgtgag
atgagctataacatggctagaagcatttatggtgataagctgccaacaatagtggaagag
agacttgaaaaagagctaaaaagtattattggccatgggttcgccgttatctacttgatt
tctcataagctagttaagaagtcactaaacgacggctatctcgttggttcacgtgggtct
gtaggttcttcatttgttgccactatgactgaaattactgaagtgaacccattaccacct
cattatgtttgtccatcttgtaagaagtcacagttctttgatgacggttctgtaggatca
gggttcgatcttcctgacaaatcatgcgaagattgcgatgtacctcttacaaaagacggt
catgacataccgtttgagacgtttctagggtttaaaggtgataaagtacccgatattgat
ttgaacttttcaggggaatatcagccgcgtgcccataattatacgaaggaactgtttgga
gaagacaatgtattccgagcgggaacaatcggtacagtcgctgagaagacggcgtacggt
tatgtaaaagggtatatgggagaccatgaccttcactatcgaggggctgaaattgatcgt
ctcgtgtcggggtgcacaggagtcaaacgtacctctggtcagcatccgggtggtattatc
gtagtaccagattatatggacatttacgatttttcacctattcagttcccagcagatgat
aaaacatcctcatggaaaacaactcattttgatttccattcgatccacgataatctgttg
aagcttgatatacttgggcacgatgatcctacggttattcgtatgcttcaagatttaagt
ggaattgatccgaaaaccatcccaacagatgacgctgaagtgatgaagctctttagtgga
acggaatctcttggagtgacacaggatcaaattatgtgtaaaacaggaacttacggaatc
ccggaattcggaacacgatttgttcgtcaaatgctagaagatacgaaacctagtacattt
tctgagctcgttcagatttcaggtctttcccacggtacagatgtgtggttaggtaatgca
caggaattgattcaagccggtacttgtaaccttagtgaagtaattggttgtcgtgatgac
attatggtttatttgatctacaaaggccttgacccgtccctcgcatttaaaataatggag
tttgtgcgaaaagggaaaggattgcaagaagagtgggtagctgaaatgaagaaacatgat
gtgccagactggtacattgattcgtgcttgaagatcaagtatatgttcccgaaagctcac
gcagcagcatatgtgttaatggctgttcggatcgcttacttcaaagttcaccatccaatt
cttttctatgcagcatactttaccgtaagagcagatgactttgacattgatacgatggcg
aaaggatccaacgcgattcgcgcaaaaatcgaagaaatcaatgaaaaaggacttgatgct
tcaccgaaagagaaaaacctattaactgtgatggagattgcgcttgaaatgtcagaacgt
ggcctccgcatgcagaaagtagatctttatcgatcaaaagcggctgaattcgtagtcgat
ggagattcgctcattcctccatttaactctcttccgggagtagggacgaatgcagctatc
aacattgaaaactccaaagaagccggtgaatttttatcaaaagaagatttacagcagcga
agcaagatttcaaagactgtacttgagtacttggatgatcatggatgtcttgaaggactt
ccagatgcgaatcaactcagcttattctaa
DBGET
integrated database retrieval system
