Guptibacillus hwajinpoensis: LC071_22200
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Entry
LC071_22200 CDS
T09276
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
phj
Guptibacillus hwajinpoensis
Pathway
phj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LC071_22200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phj03019
]
LC071_22200
03009 Ribosome biogenesis [BR:
phj03009
]
LC071_22200
Enzymes [BR:
phj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LC071_22200
Messenger RNA biogenesis [BR:
phj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LC071_22200
Ribosome biogenesis [BR:
phj03009
]
Prokaryotic type
rRNA helicases
LC071_22200
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
WLR59790
LinkDB
All DBs
Position
4297654..4299222
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AA seq
522 aa
AA seq
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MKNFEDFALSNEVRKAVLELGFKEATPIQEKALEPILEGRDMIGQAQTGTGKTAAFGIPV
IEKVKKIGGPEAIILTPTRELAMQVATELRKLSKYKGLDVLAVYGGEPIYHQIRALKRGV
NIVVGTPGRMLDHLKRKTLRTDNVHTAILDEADEMLDMGFIDDIELIFKQLPANRQSLLF
SATIPAPIRKLSSKYLKNPLTISVSKGDITADTVEQVYYRTFESDKFDTLCRVIESEDIR
LGIIFTKTKKGAAQVTESLKKRGYRAEELHGDLTQQQRSKVMNLFRKSQVNFLVATDIAA
RGIDVAHVSHVINYDIPEDPERYVHRIGRTGRAGNKGIALTLVTPKDMRFLQSIESKIKL
NLSAEPLQDETVDLDNIVKSVEKQLKKQKSDSTARETTELLLAKYNAEDLVQAFLENAIQ
QKQNTTPSEYNFGETGGQNGMVRFFLNVGRNIDLHPKKLLSELSVMAGVDTESVDRIDIF
EKFSFFEVHEDVAPFVYEALRAGGIDGKSIHLEPAKPQKSRV
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgaagaattttgaagactttgcattgtcaaatgaagttagaaaagctgtgctcgaactt
ggtttcaaagaagcgaccccgattcaggagaaagcacttgaaccaattttagaaggtaga
gatatgattggtcaggcacagaccggtacaggaaaaacagctgcttttggtattcctgtt
attgaaaaagtgaaaaaaatcggaggacctgaagccatcattcttacaccaacacgtgag
cttgctatgcaggttgcgactgagcttcggaagctttctaaatacaaaggattagatgtt
ctagccgtttacggtggggagccgatctatcatcaaatccgtgcattaaagagaggcgtt
aacatagttgtaggaacaccaggacgcatgctcgatcacttgaaacgtaaaacacttcgc
acagataacgttcatacagctattttagatgaagcagatgaaatgcttgatatgggcttt
attgatgatattgaacttattttcaagcagctaccggctaatcgccagtcgctcttgttc
tcagctacaattcctgcaccaattcgtaagctctccagcaaatatttgaagaatccacta
acgatttccgtttctaaaggagatataacagcggatacggtagagcaagtttattacaga
acttttgaaagtgataaattcgatacgctttgtcgcgtcatcgaaagtgaagacattcga
ctcggcattatttttactaaaacaaaaaaaggggcagctcaagttacagagtcattgaaa
aagcgtggctatcgagcagaagaacttcacggcgatttaacgcaacagcagcgctcgaag
gtaatgaatctctttagaaaatctcaagttaatttccttgttgcaacagatatcgcagct
cgtggaattgacgttgctcacgttagtcacgtgatcaattatgatatacctgaggaccca
gaacgctatgttcaccgtattggacgtacaggtcgcgctgggaacaaaggaattgcgtta
acgctagtaacgcctaaagacatgcgtttccttcaatccattgaatcaaaaatcaaattg
aacctatctgctgagccgcttcaggatgaaacagttgatcttgataacattgtaaaatct
gttgaaaagcagttgaaaaagcaaaaatctgattcaactgctcgtgaaacaacggagctt
cttttagctaaatataacgcagaagatcttgttcaagctttccttgagaacgccattcag
cagaagcagaacacgacaccttccgaatacaactttggtgaaacaggcggtcaaaacgga
atggttcgtttctttttaaatgtaggacgcaatattgatctgcatccaaagaaactttta
agtgagctttctgtgatggctggcgttgatacagagtctgttgaccgcattgatattttt
gagaaattctcgttctttgaagtgcacgaagatgttgcaccattcgtctatgaagcgctt
cgagctggcggtattgatggtaaatcaatccaccttgaaccagctaaaccacaaaaaagc
agagtataa
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