Paenibacillus hunanensis: SK066_00795
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Entry
SK066_00795 CDS
T09633
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
phk
Paenibacillus hunanensis
Pathway
phk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SK066_00795 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phk03019
]
SK066_00795 (rnr)
03016 Transfer RNA biogenesis [BR:
phk03016
]
SK066_00795 (rnr)
Enzymes [BR:
phk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SK066_00795 (rnr)
Messenger RNA biogenesis [BR:
phk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SK066_00795 (rnr)
Transfer RNA biogenesis [BR:
phk03016
]
Prokaryotic type
tRNA degradation factors
SK066_00795 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_HELZ2
OB_RNR_1st
OB_Dis3
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
WPP41533
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All DBs
Position
186277..189081
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AA seq
934 aa
AA seq
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MITEEQLLTFMRATAYKPMTYQELEEHFRIEDASDFKELVKLLNRLEEAGDIVVNSANRY
GVPERMDLVKGRIQAHAKGFAFLIPEDREHGDVYIHANDLNTAMNGDTVLVKVTSRNASG
GRMEGVVVRVLVRKNTRIVGVFQGLDTYGFVLPDDKRINRDIFIPKESFGNAVDGEKVVA
EIVSYPEGRAAAEGRIVEVLGHKDDPGVDILSIIRKHQLPEAFPDEVMDEAQGAPDAITE
EEIIQQGRRDLRGKNIVTIDGEDAKDLDDAVNVERLPNGNYRLGVHIADVGYYVREGSKL
DEEAYNRGCSVYLVDRVIPMLPHRLSNGICSLNPQVDRLTLSCEMEFDENMKVVQHDIFT
SVIKTKERMTYKNVRRILEDEDPELMERYAPLIDDFKLMRELAMKLRGNRMRRGAVDFDF
EESKIILDETGKPIDIVKRERSIAEQIIEEFMLAANETVAEHFHWLKVPFLYRIHENPDQ
EKLQSFLGFVQNFGYAVKGTGNLIHPRALQQLLEEIKGEKEETVISTMMLRSMKQAKYSA
DSSGHFGLAAEYYSHFTSPIRRYPDLVIHRVIREVIENGGGGLSPERQAYLESRMSDIAQ
QSSERERVAVDAERDTDQLKKAEYMLDKVGEEFEGIISSVTGFGMFIELENTVEGLIRLG
MLTDDYYHFDDKQMILLGERTSRIFRIGDTITIRVAGVNMDDHTIDFELTDMPKSNRRFA
DRGARGESERRGGRGTRTDSGNGERAAGTGRRSKNKNAKKAERFGRAAKKAKANAGGNGT
AASTPNGRTGDSSVASGNASNGKGGDSVRYPTGGRSKRKRGSAGGATSAQATPTGSGSET
ASSGNSSNKKKRKKDSGINFSSSSKGGESSTRSFAFGSGKGGYSSPVESSKKKKSKSRKP
SDASSSVTNSAPAESSKPPKRKFKKKKDKSKGTE
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgattacagaagaacaattattaacatttatgcgggcaaccgcttataaaccaatgacg
taccaggaactagaggagcattttcgtattgaagatgcctcggattttaaggagcttgtg
aagctgctgaatcgcttggaggaagctggcgatatcgttgtgaatagcgccaatcgctat
ggcgtaccggaacgtatggatctggtcaaagggcgcattcaggcgcacgcgaagggcttt
gcctttctgattcctgaggatcgcgagcatggagacgtgtacatccatgccaatgacctg
aacaccgcgatgaacggagataccgtactggtgaaggtcacctcacgtaacgcttctggc
ggacgcatggaaggcgttgtggtgcgtgtacttgttcgtaaaaatacgcgcatcgttggc
gtgttccagggactggacacgtatggctttgtgctgccagatgacaagcgcattaaccgc
gatattttcattccgaaggagtcgtttggcaatgcagtagacggcgaaaaggtcgttgct
gagattgtcagctatccagagggacgcgcggctgcggaaggtcgcattgttgaggtgctg
ggacataaggatgatccgggcgtcgatattctgtcgatcattcgcaagcatcagctgccg
gaagccttcccggatgaagtgatggacgaggcgcagggcgcaccggatgcgatcacggaa
gaagagatcatccagcagggtcgccgcgatctacgtggcaaaaacattgttaccatcgat
ggcgaggatgcaaaggatctggatgatgcggttaacgtagagcgcctgccgaatgggaac
tatcgtctgggcgtgcatatcgccgatgtaggctattatgtgcgcgaaggctccaagctg
gacgaggaagcctacaatcgtggctgtagcgtgtatctggtcgaccgcgtcattccgatg
ctgccgcatcgcctgtccaacggaatctgtagcttgaatccacaggtggatcgtctgacg
ctgagctgtgagatggaatttgacgagaatatgaaggtcgtgcagcatgatattttcacc
agtgtgatcaagacgaaggaacggatgacgtacaaaaatgtacgccgtattctggaggat
gaagatcctgagctgatggagcgttatgcaccgctgatcgacgacttcaagctgatgcgt
gagctggcgatgaagctgcgtggtaaccggatgcgccgtggtgcagtcgattttgacttt
gaagaatcgaagatcatcctggatgaaacgggcaagccaatcgatatcgtcaaacgcgag
cgttcgatcgccgagcagatcatcgaggaattcatgctggctgccaacgaaacggtagcc
gagcatttccactggcttaaagtgccattcctgtaccgtatccacgaaaacccggatcag
gagaagctgcaaagcttcctcggcttcgtacaaaacttcgggtatgcggtcaaagggaca
ggcaatctgatccacccgcgtgcgcttcagcaattgctggaggagatcaagggtgaaaag
gaagagacagtgatcagcacgatgatgctgcgctcgatgaagcaggccaaatattccgca
gacagctctggtcacttcggacttgccgctgaatactatagccacttcacttcaccgatt
cgtcgttaccccgatctcgtcattcaccgcgtgatccgcgaagtaatcgaaaacggtggc
ggtgggctctcaccagaacgtcaggcgtatctggaatcccgtatgtcagatatcgcccag
caatcatccgagcgtgagcgtgtcgctgtagacgctgagcgcgataccgaccagctcaaa
aaagcggagtacatgctggataaagtgggcgaggaattcgaaggaatcatcagcagtgta
accggcttcggtatgttcatcgagctggaaaataccgtagagggcctgatccgtcttggt
atgctgacggacgattactaccatttcgacgataagcagatgattctactcggcgagcgc
acatcacgtatcttccgtatcggggatacaattaccattcgtgtagccggcgtgaatatg
gacgatcatacgatcgatttcgagctgacggatatgccgaagtcgaatcgtcgctttgca
gatcgtggcgcacgtggagagagcgaacgtcgcggcggacgcggtacacgcacagatagt
ggcaacggcgagcgcgccgctggcacaggacgtagaagcaaaaacaaaaatgcgaaaaaa
gccgagcgcttcggacgcgctgccaagaaggcaaaagcaaatgctggtggtaacggtaca
gcagcaagtacaccaaatgggcgtactggagacagtagcgttgcttcaggtaacgcgagt
aacggcaaaggcggcgattccgtacgctatcctacaggcggtcgcagcaagcgcaaacgt
ggctccgcaggaggagctacatctgcgcaagccactccaacaggaagtggaagtgaaact
gcaagctccggtaacagctccaacaagaagaaacggaaaaaggacagcggcattaacttc
tccagttcttctaagggtggagaaagcagtacgcgtagcttcgccttcggctctggcaaa
ggcggttatagtagcccggtggaatcaagtaaaaagaagaaaagtaaatcccgtaagcct
tctgacgcttcatcatcagtaacgaatagcgctccagcagaatcaagcaagccgcctaag
cgtaagttcaagaaaaagaaggataagtcgaagggtacggaataa
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