Paenibacillus hunanensis: SK066_04275
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Entry
SK066_04275 CDS
T09633
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
phk
Paenibacillus hunanensis
Brite
KEGG Orthology (KO) [BR:
phk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
phk03009
]
SK066_04275 (rlmD)
Enzymes [BR:
phk01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
SK066_04275 (rlmD)
Ribosome biogenesis [BR:
phk03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
SK066_04275 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
Methyltransf_15
MTS
PrmA
Cons_hypoth95
TRM5-TYW2_MTfase
Methyltransf_11
Methyltransf_32
N6_N4_Mtase
UPF0020
RrnaAD
Methyltransf_12
PCMT
Ubie_methyltran
Methyltransf_23
Motif
Other DBs
NCBI-ProteinID:
WPP42180
LinkDB
All DBs
Position
1081538..1083211
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AA seq
557 aa
AA seq
DB search
MNNNRKGGHSHKSKSNRRKPAAVSAAIANLPVAKNDEIELEMIGLTHEGEGVGRADGYTL
FVSGALPGERVKARVLKTKKQYGYAKLLKVLNESPDRVQAPCPIYTQCGGCQLQHMSYAG
QLEWKRQHVIDNLERIGKLTVQKQARSDDADSQLVEGTVTGNTPIRGASAEDTTVKSSVD
QNMHSSEVGSHVPDVQHPADASTSTKPIVSASHAIRVLPTLGMSEPWRYRNKAQVPIGQQ
DGQLVGGFYARGSHRIVDMQSCLIQDSRNDELVNKVKAIGQELHIQPYNEETGEGILRHV
VVKVGFATNEMMIVLVTNGERLPRKPEWIERIRAEMPQVVSICQNINTKQTNVIFGDETR
TLWGRDVIHDYIGDVKFAISARSFYQVNPVQTEVLYEKAVQYAGLTGNETVIDAYCGIGT
ISLFLAQHAKRVYGVEIVKEAIEDARKNAELNGMTNVEFEVGASEDVIPRWKEQGITPDV
IVVDPPRKGCDPRLLETIVQMQPEKVVYVSCNPSTLARDLQVLEEGGYRTVEVQPVDMFP
HTVHVESVAVLQWQPSE
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgaataacaaccgcaaaggcggtcactcacataaatcaaaatccaatcgacgtaaaccg
gcagccgtatccgcagcaatcgctaatctgccggtagccaaaaatgatgaaatcgagctg
gaaatgatcggcttaactcatgaaggcgaaggtgtcggtcgcgcagacggctatacgtta
ttcgtatctggcgcactacccggcgaacgtgtgaaagcccgtgtactcaaaaccaaaaaa
caatatggctatgccaagctattaaaggtattaaacgaaagcccagatcgcgtacaagcc
ccttgcccgatctacacccaatgtggcggctgtcagctccagcatatgagctacgctgga
cagctagagtggaaacgtcagcatgttatcgacaatctggagcgaatcggtaaactgact
gtgcagaagcaggcaaggtcagatgatgcggacagccagttggtagaaggtacagtaacc
ggaaatacaccgatacgaggtgcatcagcagaagatacgaccgtaaaatcgagtgtagat
cagaatatgcattcttccgaagtcggatcacatgtaccagatgtccagcatccagcggac
gcgtctacgtccacgaaacctatagtatccgcatcccatgcgatccgtgtcctaccaacg
ctcggtatgtcagagccgtggcgctatcgcaacaaagcacaggtaccgatcggtcaacag
gatggacaactggtaggtggcttctatgcacgtggtagccaccgtattgtcgacatgcaa
agctgcctgatccaggacagtcgtaacgatgaactcgtcaacaaggtgaaagcgatcggt
caggagctgcatatccagccttataacgaagaaacaggggaaggtattctacgccatgtc
gtcgtcaaagtcggcttcgctacaaatgaaatgatgatcgtactcgtcaccaacggcgaa
cgcctgccacgcaagcccgaatggatcgaacgcatccgcgctgaaatgccacaggtcgtg
agcatttgccagaacatcaacacgaagcaaacgaacgttattttcggcgacgaaacgcgt
accctgtggggacgtgatgtcatccatgattatatcggcgatgtaaagttcgccatctct
gcacgttcattctatcaggtgaatcccgtgcagacggaagtgctgtatgagaaagctgta
cagtatgctggcttgacgggtaacgagacggtgatcgatgcgtactgtggaatcggtaca
atctctctattcctcgcacagcatgcgaagcgtgtatacggcgtggagatcgtgaaggaa
gcgattgaggacgcgcgtaaaaatgccgaactgaacggaatgacgaatgtggaatttgag
gtaggtgcatccgaggatgtgattccacgctggaaagagcaggggattacgccggatgtg
atcgttgtcgatccaccacgtaagggatgtgatccgagattactggagacgattgtacag
atgcagccggagaaggttgtgtatgtgtcgtgtaatccatctacgctggcacgagatttg
caggtgctggaggaaggcggatatcggacggttgaggtgcagccggtggatatgttcccg
catacggtgcatgtggagtcggtggcggttcttcaatggcaaccatctgaataa
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