Paenibacillus hunanensis: SK066_10540
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Entry
SK066_10540 CDS
T09633
Name
(GenBank) DNA-formamidopyrimidine glycosylase family protein
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
phk
Paenibacillus hunanensis
Pathway
phk03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
phk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SK066_10540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phk03400
]
SK066_10540
Enzymes [BR:
phk01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
SK066_10540
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
SK066_10540
DNA repair and recombination proteins [BR:
phk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SK066_10540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
NFACT_N
Ribosomal_S13
Motif
Other DBs
NCBI-ProteinID:
WPP43336
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Position
2588861..2589685
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AA seq
274 aa
AA seq
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MPELPEIENYKVQLTHYILNTSIEKLVIHRARVANVEADPVNLMLSGNRIAFIERRGKYL
NLHLHSGHRLLISIVAGSSLYYGLREQNEDRKCDVELQFEDGSSLYYTAGRQGVFHYCSA
RESQEYFAGLGLEATDRKLTREQFIKLLKGRRSALKTALMNQSLIAGIGSYYADEIAFTA
GILPSAKVQELDEEALGKLYEAMRNVLQEAIDAGGHMEGQPLTANDSLTGGFHALRRVYE
REGEPSVRSSDDKVTKMEVAGKKAYYCPASQFEN
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattgccggaaattgaaaattataaagtacaactgactcattatattttgaac
acatcgattgagaagctggtgatccatcgtgcgcgtgtagcgaatgtagaggcagatcca
gtaaacctgatgcttagcggtaatcgtattgcctttattgaacgtcgtgggaaatatctg
aatttgcacctgcatagtggacatcgtttgctgattagcatcgtggcaggtagctcgctg
tattatggtctgcgtgagcaaaatgaagatcgcaaatgtgatgtagagctgcaattcgaa
gatggtagctccctgtattacacagccgggcgtcagggcgtattccactattgctctgcg
cgagagtcgcaggaatactttgccggtctcggtctggaagcaacggatcgtaagctgaca
cgcgagcaatttatcaagctgttaaaaggacgccgcagtgcattgaaaacagcgctgatg
aatcagtcgctgatcgcagggattggcagctattatgcagacgagattgcctttaccgca
ggtatcctgccttcggcaaaggtgcaggaactggatgaggaagcactaggcaagctatat
gaagccatgcgtaatgtgctacaggaagcgattgatgcaggtgggcatatggaagggcaa
ccgctgacagcgaatgattcgttaacaggtggcttccatgcgctgcgccgtgtatatgag
cgtgaaggtgagccatctgtgcgttcgtcagatgataaggtgaccaaaatggaagtggca
ggtaaaaaagcgtactactgtccagcttcccaatttgaaaactaa
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