Paenibacillus hunanensis: SK066_13375
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Entry
SK066_13375 CDS
T09633
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
phk
Paenibacillus hunanensis
Brite
KEGG Orthology (KO) [BR:
phk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phk03019
]
SK066_13375 (hrpB)
Enzymes [BR:
phk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SK066_13375 (hrpB)
Messenger RNA biogenesis [BR:
phk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SK066_13375 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
ResIII
Flavi_DEAD
HA2_C
AAA_22
AAA_19
nSTAND3
HA2_N
Motif
Other DBs
NCBI-ProteinID:
WPP39617
LinkDB
All DBs
Position
complement(3320267..3322873)
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AA seq
868 aa
AA seq
DB search
MKDELHSSSVASALPVDELIPSLKQHLQETGAAVLIAEPGAGKTTRIPLALMEEAWLAGR
RIVMLEPRRLAAISAARYMAATLGEKVGQTVGYRVALDTRVSAATRIEVVTEGVLTRMLQ
HDPSLEQVGLVIFDEFHERNLNADLGLAFTLESRSLLREDLRVLVMSATMEPRPVAQLLG
DAPVLRSGGRSYPVETYYEAGESAYTLYRKPGARMEPKIVHVIHRALQEQEGELLVFLPG
MREIRSVQNELLHSGQQLPVGVEVVILHGGLKAEQQDEAVRPRGDGTRRIILSTSLAESS
VTIQGVSIVIDSGLMRTRVFSPTTGMERMETRQISVDAADQRRGRAGRQQPGVCYRLWSA
EEHRILPAERRPEMLQSDLSPLALEVAAWGSDVGEMAWLTPPPEAAYREGQLLLQQLDAI
DEQLRITTHGRNMTVIGAHPRLSHMMIKAGELELIPEACDLAALLQERDILPPAAGIELA
ERVRALYGRSKHRVETSAVERIKEWSQRFVRQWRELERMEEAIDQQSSVSVKKSASLSAS
DGWIGALLSLAYPDRIGQNRRDGRFLLRMGRGALLPNGYGGTHLLAGTPYIVAAELEDVG
TDSRILLAAALEEDMLKQLHANHISDRTEVTYDEDKEAIRAQRVQRLGAIVLRAVNDTAP
STESIRSALIVALQGHARGLDWFNWTKPATQLRERMGVMHRLQPEHYPAMNDAALLSHAE
DWLLPYMGDIRRLSDLRRLSMTELLLGMLDWQQRQEMEQVVPTHITVPSGSRIPIDYSDP
AQPFIAVRLQEMFGCMSTPLLGGRIPLTIQLLSPASRPVQVTRDLASFWANTYFEVKKDL
KGRYPKHYWPDDPLQAQATNRVKPRQNG
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
gtgaaggacgaattacattcaagctctgtagcttcagcattacctgtagatgaattgatt
ccttcattgaagcagcatttacaggagacaggtgcggcagttctgattgctgagccggga
gcaggcaagacgacgcgtattccactggcattaatggaggaggcgtggctagctggtcgc
cgtattgtgatgctagagccgcgcagactggcagcgatctcggcagcgcgctatatggcg
gcaacacttggcgaaaaggtagggcagacagtaggctatcgggtagcgctggatacacgg
gttagtgctgcgacacgaattgaggtggtcacagaaggcgtgctgactcgaatgctacag
catgacccatcgctggagcaggttggattagtcatatttgatgagttccacgagcgtaat
ctgaatgccgatctggggcttgctttcacgctggaaagcaggtctcttttgcgtgaggat
ctacgcgtgctggtcatgtcggctacgatggagcctcggcctgtagcgcagttgttaggt
gatgcgcctgtgctccgcagtgggggacgcagctatccagtggaaacgtattatgaagca
ggtgagtctgcttatacgctgtatcgcaagccgggagcgcgtatggaacctaagattgtc
catgtaattcacagggcactccaggagcaggaaggagaattacttgtctttttgccagga
atgcgtgaaattcggtctgtgcaaaacgaattactccatagtggacaacagttgccagta
ggagtggaagtcgttattttgcatggcggcttgaaggcagagcagcaggatgaagcggta
cgaccgcgtggtgatggcacacgccggattattttatcgacttcactggcagaatccagt
gtaacgatacaaggggtatcgatcgttatcgatagcggattgatgcgcacacgtgtattt
tcgccgaccacaggaatggagcggatggaaacgcggcagatatcggttgatgcagccgat
cagcgtcgtggacgtgcaggcagacaacagccgggtgtatgctatcgcctgtggagcgct
gaagagcatcgtatattacctgccgagcgccgacccgaaatgctacaaagcgatctatcg
ccgctggctctggaggttgctgcctggggaagtgatgtaggggagatggcgtggcttaca
cctccgcctgaagcggcttatcgagaagggcagctattgcttcagcagctggacgcgatc
gatgaacagcttcgtatcacgacacatggacgaaatatgacagttatcggtgcgcatcca
agactttcccacatgatgatcaaggcgggcgagctagagcttattccagaggcatgtgat
ctggcagccttgttgcaggaacgagatattttaccgcctgctgctggtatcgagctagcg
gagcgtgtgcgcgcattatatggaagaagtaaacatcgtgtagagacgagcgcagtagag
cggattaaggaatggagccagcgatttgtacgtcaatggcgtgagctagagcgtatggaa
gaggctatagatcagcagtcatcggtttcagttaaaaagtcagcttcgttatctgcatcc
gacggctggattggtgctctgttatcactcgcttatcccgaccgtatcgggcaaaatcgc
cgagatgggcgatttttgctgcggatggggcgaggtgcgcttttgccgaatggatatggt
ggaactcatctacttgcaggcacaccctatattgtggcggctgagctggaggatgtgggc
accgatagccgtattctgctagcggctgcgctagaggaagatatgttaaagcagcttcat
gccaatcatatctcggatcgcaccgaggttacttatgatgaagataaagaagcgattcgt
gctcaaagggtacaacgactgggtgcgattgtactgcgagcagtaaatgatactgcaccg
tccactgaatcgattcgaagtgcattgattgtagccctgcaaggtcatgcacgcggcctg
gattggttcaattggacgaagccagctacccagctacgtgagcgtatgggggtaatgcat
aggttacagccagagcattatcccgcgatgaatgatgcagccctcctgtcccatgcggag
gattggctgctgccttatatgggcgacatccggcgattatctgatctgcgccgtttatct
atgaccgagctgctactcggtatgctggattggcagcagcggcaggagatggagcaggta
gtacctacgcatattaccgtaccgagcggctcgcggattccgattgattatagcgatcca
gcgcagccatttatcgcggttcgattacaggaaatgttcggctgtatgtctacccctctg
cttggtggacgcattccgctaacgattcaattgctttctcctgccagtcgcccggtgcag
gtaactcgcgatctggcaagcttctgggcgaatacttatttcgaagtgaaaaaggatcta
aaaggcagatatccaaagcattactggccggatgatccattacaggcgcaggcaacgaat
cgagtgaagccaaggcaaaatggatag
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