Paenibacillus hunanensis: SK066_15580
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Entry
SK066_15580 CDS
T09633
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
phk
Paenibacillus hunanensis
Pathway
phk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SK066_15580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phk03019
]
SK066_15580
03009 Ribosome biogenesis [BR:
phk03009
]
SK066_15580
Enzymes [BR:
phk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SK066_15580
Messenger RNA biogenesis [BR:
phk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SK066_15580
Ribosome biogenesis [BR:
phk03009
]
Prokaryotic type
rRNA helicases
SK066_15580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
Helicase_RecD
AAA_30
AAA_22
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
WPP40031
LinkDB
All DBs
Position
complement(3829997..3831583)
Genome browser
AA seq
528 aa
AA seq
DB search
MTKFVDFGLDEKVLKAIMELGFEEATPIQSKSIPIAMEGSDLIGQAQTGTGKTAAFSIPV
INKIERSDEKIRALVMAPTRELAIQVAEEIEKLARFKGIRSLPIYGGQEIGRQIRALKKK
PQIIIGTPGRLLDHINRKTIKLDDVQYVILDEADEMLDMGFMEDIQSILKQVPDERQTML
FSATMPPNIQRLANQFLKEPQHVSVIPKQVSAPLIDQSYIEVNERQKFDALSRLLDMESP
ELAIVFGRTKRRVDELSEALQKRGYSADGLHGDLSQNQRDNVMRKFRDGSIDVLVATDVA
ARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGAAYSFVTPREIDHLHFIERVTR
HKITRKPLPSLAEAIEGKQRITAERLLELVQDDTAPLNEYKGIAIQLLESYDSVNLLAAA
MKLLTGDKKDAQIDLTPEDPIRAKRRRPDVRSGGRKPSGGYNRSGGGYKGGNREGGSGNR
GGYSSGGGYKGSNREGGRSEYSRDRKPRSNNGGGDRRPSSSNRTDSFE
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaaatttgtagactttgggttagatgaaaaagtattaaaagcaatcatggagctg
ggctttgaggaagcgacaccaattcagtccaaatccattccgattgcaatggaaggcagt
gacctgatcggtcaagcacaaacaggtacgggtaaaacagcggcattcagcatccctgtt
attaacaagatcgaacgttcggacgaaaaaatcagagcactcgtaatggcaccaacacgc
gaactggcgatccaggttgcagaagaaatcgaaaagctcgctcgttttaaaggtattcgt
tcgttgccaatctacggtggtcaggaaattggccgtcagattcgtgcattgaaaaagaaa
ccacagatcattatcggtacaccaggtcgtttgcttgaccatatcaaccgtaaaacaatc
aagctggatgacgtacaatacgtaatcctggatgaagcagatgaaatgctggatatgggc
tttatggaagacattcagtcgatcctgaagcaagtaccggatgagcgtcaaacgatgctg
ttctctgcaacaatgccaccaaacattcagcgtctggcgaatcagttcctgaaagagcca
caacacgtatccgtaattccaaaacaggttagtgcaccgctgatcgaccaatcctacatc
gaagtaaacgagcgtcaaaagtttgacgcactgtcccgtttgctggatatggaatctcca
gagctggcaatcgtattcggtcgtacaaaacgtcgtgtagacgagctgtccgaagcgctg
caaaaacgtggttactccgcagacggtctgcatggtgacctgtctcagaaccagcgtgat
aacgtaatgcgtaaattccgcgacggtagcatcgatgtactcgtagcaactgacgttgca
gcacgtggtctggacgtatccggcgtaactcacgttgtgaactttgacctgccgcaagat
ccagaaagctatgttcaccgtatcggtcgtacaggccgtgctggtaaagaaggcgcagcg
tactcattcgttacaccgcgtgagatcgatcacctgcacttcatcgagcgtgtaacgcgc
cacaaaatcactcgtaagcctctgccatccctggctgaagcgatcgaaggtaaacaacgt
attacagctgagcgtctgttggagcttgtacaggacgatacagcaccactgaacgaatac
aaaggtatcgcgattcaattgctggaaagctatgattccgtgaacctgctggcagcagca
atgaagttgctgactggcgacaaaaaggatgctcagatcgatctgactccagaagatcca
attcgtgcaaaacgtcgtagaccagacgttcgctccggcggacgcaagccatctggcggt
tacaaccgtagtggcggtggctacaaaggcggcaatcgcgaaggtggtagtggtaaccgt
ggtggatacagcagcggtggcggctataaaggcagtaaccgtgaaggcggacgtagcgag
tactctcgtgaccgcaagccacgtagcaacaacggtggcggcgaccgtcgtccatctagt
agcaaccgtacagattcttttgaataa
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