Paenibacillus hunanensis: SK066_20370
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Entry
SK066_20370 CDS
T09633
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
phk
Paenibacillus hunanensis
Pathway
phk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
phk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SK066_20370 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phk03021
]
SK066_20370 (rpoC)
03400 DNA repair and recombination proteins [BR:
phk03400
]
SK066_20370 (rpoC)
Enzymes [BR:
phk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SK066_20370 (rpoC)
Transcription machinery [BR:
phk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SK066_20370 (rpoC)
DNA repair and recombination proteins [BR:
phk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SK066_20370 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
WPP40895
LinkDB
All DBs
Position
complement(4995222..4998836)
Genome browser
AA seq
1204 aa
AA seq
DB search
MIDVNNFEFMKIGLASPDKIRSWSRGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM
SPRSLEEVIYFASYVVTDPGETPLEKKQLLSEKEYRSYREKYGYGFQAGMGAEAIKKLLQ
DLDLDKELEFLREELRTAQGQRRNRAIKRLEVIEAFRNSGNSPDWMIMDVLPVIPPEIRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPYLKMYQCGLPKE
MALELFKPFVMKELVNKGLAHNIKSAKRKVERVSPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPILVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLASGNIL
NPKDGKPVVTPSQDMVLGSYYLTMDNMEAKGSGMILRTVNEAVSAYQRGTASLHARVAIP
AKALGKTSFTEKQQTGLLVTTVGRIIFNEIFPESFPYINEPTRANLYQGIPDHYFIYEKG
TDVLEFMKAVPQTGAIGKEYLGTIIARCFEIYHTTLTSVILDKIKQLGFTYSTRAGITVA
VSDVVVPPEKTELLAESDKKVAVITNQYRRGLITNEERYDRVIEIWSRTKDELTDILMKS
MDRYNSIMLMVDSKARGNKSQITQLGGMRGLMANPSGRIIELPIKSNFREGLTVLEYFLS
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREDDCGTDKGFIVGRIQDGKEVIEDL
YDRLEGRYCFETVRHPETGEIIVGRNELIDSDKAEAIVAAGINKVQIRSVLSCRTRHGVC
KKCYGRNLATGNHVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL
FEARNPKGQATISEIDGIVKEIREAKDRREIEIEGEAETKVYSVPYGSRLRVREGAEIEA
GDELTEGSIDPKEMLRIKGIRGVQNYILQEVQRVYRNQGVEINDKHVEVMIRQMLRKIRI
VDNGETTLLPGSFVDMYEYEDANKVAIIADREPAVAKPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKVDKLLGLKENVIIGKLIPAGTGMNRYRSVKFEEPEQLEGNEENLET
VTVE
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
ttgatagacgttaacaatttcgaatttatgaaaattgggcttgcttccccagacaaaatt
cgttcttggtcccgcggagaagttaaaaaaccggagacaatcaactaccgtacgctcaag
ccagaaaaggatggtctgttctgcgaacgcattttcggaccaaccaaggactgggagtgt
cattgcggtaaatacaagcgtgtacgttacaaaggggtcgtttgtgaccgttgtggcgtt
gaagtaactcgtgcaaaagtacgccgtgagcgtatgggacacatcgaactggcagcacct
gtatcgcatatctggtacttcaaaggtatcccgagccgtatgggtctggcactggacatg
tccccacgttcccttgaggaagttatctactttgcatcttatgttgttacggatccaggc
gagacaccactggagaagaaacaactgctgtctgaaaaagaataccgtagctaccgtgaa
aaatatggctatggcttccaagcaggtatgggtgcagaagcaattaaaaaattgctgcaa
gacctcgatttggacaaagaactggaattcctgcgtgaagagctgcgtactgcacagggt
caacgtcgtaaccgtgcgatcaaacgccttgaagttatcgaagcattccgtaattccggc
aactctccagattggatgattatggacgtactgccggttattccaccggaaattcgtcca
atggtacagctggatggcggacgttttgcaacatctgacctgaacgatctgtatcgtcgt
gtcatcaaccgtaacaaccgtctgaaacgcctgcttgatctgggcgcgcctgacattatc
gtacaaaatgagaaacgtatgctgcaagaagcggtagatgctctgatcgataacggtcgt
cgtggacgtccggtaacaggtccgggtaaccgcccattgaaatctctcagccacatgctg
aaaggtaaacagggtcgtttccgtcagaacttgctcggtaaacgtgtcgactattctggt
cgttccgttatcgtcgtaggtccttacctgaaaatgtaccagtgcggtctgccaaaagaa
atggcactggaactgttcaagcctttcgttatgaaagagctggtaaacaaaggtctggca
cacaacatcaagagtgcgaagcgcaaagttgaacgcgtaagccctgaagtgtgggatgtg
ctggaagaagtaatcaaagagcacccggttctattgaaccgtgcaccgacgctgcacaga
ctcggtatccaggcatttgaacctattctggttgaaggccgcgcgatccgtctgcaccca
ctcgtatgtacagcgtacaacgctgactttgacggtgaccaaatggcggttcacgtacca
ttgtctgctgaagcacaagctgaagcacgcctgctgatgctggcatctggtaacatcctt
aaccctaaggacggcaaaccggttgttacaccatcccaggatatggtgcttggttcgtac
tacctgacaatggacaacatggaagccaaaggctccggcatgattctgcgtaccgtgaac
gaagcggtatctgcatatcagcgtggaacagcttccctgcatgctcgtgttgcaattccg
gcaaaagctctgggtaaaacaagctttaccgagaagcaacaaacaggtctgctcgtaacg
acggttggacggattatcttcaacgagattttccctgaatccttcccttacatcaacgag
ccgactcgtgcgaacctgtatcaaggtattccggatcactacttcatctatgaaaaaggt
acagacgtactggaattcatgaaggctgttccacaaaccggcgcgatcggtaaagaatat
ctcggtaccatcattgcgcgttgtttcgaaatttaccatacaacattgacttcggtcatt
ttggataaaatcaagcagcttggtttcacatactctacacgtgcgggtattaccgttgcc
gtgtcagacgttgtggttccaccggaaaaaaccgaactcttggctgaatccgataaaaag
gttgcggttattacgaaccaataccgtcgtggtctgatcacaaatgaagagcgttatgac
cgtgttatcgaaatctggtctcgtactaaggacgagctgacggatatccttatgaaatcg
atggatcgctacaactccatcatgctcatggttgattccaaagcccgtggtaacaaatcg
cagatcacccagctgggcggtatgcgtggtctgatggccaacccatccggtcggatcatc
gagctcccaatcaaatcgaacttccgtgaaggtctgacagtccttgagtacttcctgtcc
actcacggtgcgcgtaaaggtctggcggatacagcgcttcgtacggctgactccggttac
ctgactcgccgccttgttgacgtagcacaggacgtaatcgttcgcgaagacgattgtggt
acagataaaggcttcatcgttggtcgtatccaggatggtaaagaggttatcgaggatctg
tacgatcgtctggaaggacgctactgcttcgaaactgttcgtcatccagaaactggcgaa
attatcgttggtcgcaacgagctgatcgattctgacaaagcagaagcgatcgttgctgct
ggcatcaacaaagtacagattcgttccgtactgagctgccgtacgcgtcatggcgtatgt
aaaaaatgttacggtcgtaacctggcaactggtaaccatgtggagatcggtgaagcggtt
ggtattatcgctgcccaatccatcggtgagccaggaacacagttgacgatgcgtacgttc
cacaccggtggtgtagccggagacgatatcacacaaggtttgccgcgtatccaggagctg
tttgaagcccgtaaccctaaaggtcaggctacaatcagtgagattgatggtatcgtgaaa
gaaattcgcgaagcgaaagaccgtcgtgaaatcgagatcgaaggcgaagcagaaacgaaa
gtctactctgtaccttacggttcccgtctgcgtgtacgcgaaggcgctgagatcgaagca
ggggacgagctgactgaaggttcgatcgacccgaaagaaatgctacgtattaaaggtatt
cgcggtgtgcagaactacattctgcaagaagttcaacgcgtatatcgtaaccagggcgta
gaaatcaacgataaacacgttgaggttatgatccgtcaaatgctgcgcaaaatccgtatc
gtagataacggcgaaacgacactgctgccaggctcctttgttgacatgtatgagtatgaa
gatgcaaacaaagtggcaatcattgcagatcgtgaacctgctgttgcgaaaccggtattg
ctcggtattacgaaggcttctctggagactgactccttcctgtccgctgcatcgttccag
gagacgactcgtgtcctgactgatgctgcaatcaaaggtaaagtcgacaagctgctcggc
ctcaaagagaacgttattatcggtaaactgattcctgccggaacaggtatgaaccgttac
cgtagcgttaagttcgaagagccagagcaactggaaggcaacgaagaaaacctggaaact
gtaacggtcgagtag
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