Pelagibacterium halotolerans: KKY_1330
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Entry
KKY_1330 CDS
T01645
Name
(GenBank) metallo-beta-lactamase family protein, RNA-specific
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
phl
Pelagibacterium halotolerans
Pathway
phl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KKY_1330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phl03019
]
KKY_1330
Messenger RNA biogenesis [BR:
phl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KKY_1330
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Motif
Other DBs
NCBI-ProteinID:
AEQ51352
UniProt:
G4R874
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Position
1300777..1302489
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AA seq
570 aa
AA seq
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MTETRSRKYPMAKKQSGQDEMVFLPLGGVGEIGMNMGLYGFGPVDDRKWLVVDCGVSFGG
PELPGIELVMPDPSFLEEEGDNVVGLVLTHAHEDHYGAILDIWPAFDKPVFAGRFGAAML
KAKRISNNIEDDVEVQIFTPGIPFQVGPFKVEPIEVSHSIPESNALLIETPAGRVIHTGD
WKIDPSPIGTAPTNIKRFKEIGSDGKPLALICDSTNAMKEGDSPSETEVGVNLERLIATA
KNRVAVTIFASNLGRMISIARAAAKAARQVVAAGRAVHRIAGIARELGLMEGVPEFLDQD
AYGYLPRDKVVLIATGSQGESRAAMARIADGSHPVIDLSPGDMAIFSSWAIPGNEKAVLD
IQNKLVDKGVEIVTGRDEMIHVSGHPRRHELAQLYDWLKPDILVPVHGEPMHLEAHAAFA
REKGIKTVVSIRNGDMVQLFPNTKHHRGEVRTGVLYLDGNLLCTPEESNVRDRRRLAFGG
VAIVSLVVNGRGQIVSGPEFDLDGLPDLADDDDPLSAVAHSAARGAIKSFPEKRRTDTGR
FAEAIRRAVRSELNAAWGRKPIVKVFVHKV
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
gtgactgaaacccggtcgcgcaaatatcccatggcaaaaaaacagtccggacaggacgaa
atggtcttcttgcccctcggtggcgttggcgagatcggtatgaatatggggctttacggc
ttcggcccggtcgatgatcgcaaatggctggtcgtcgattgcggcgttagcttcggcggc
cctgagcttcccggaatcgaactggtcatgccagacccttcattcctggaggaagagggc
gacaacgtcgtcgggctggttttgacccatgcccatgaagaccactacggagccattctc
gatatctggcccgccttcgacaagccggtatttgccggacggttcggggcggcgatgctc
aaggcaaagcggatatcaaacaacatcgaggacgacgtcgaggtccagatctttacgccc
ggcatcccctttcaggtcggccccttcaaggtcgagcccatcgaggtttcccactcgatc
ccagaatccaacgcgctattgatcgaaacgcccgctggccgcgtcatccacaccggcgat
tggaagatcgatccgtctcctatcggcaccgcacccaccaacataaagcgcttcaaggaa
atcggttcggacggcaagccgctcgctctgatctgcgattccaccaatgcgatgaaggaa
ggtgacagtccctctgaaaccgaggtcggcgttaatctcgagcgcctgatcgcaacagca
aaaaaccgcgtcgccgtcaccatctttgcctccaatcttggccgcatgatttccattgcc
cgggctgccgcaaaggcagcccgtcaggtcgtcgctgcgggcagggctgtgcaccggatc
gccgggatcgcccgcgaactgggcttgatggaaggcgtaccggaattccttgatcaggac
gcctatggttatctgccgcgcgacaaggtcgttctgatcgccacaggcagtcagggcgag
tcccgggccgcaatggcccgcatcgccgatggctcccacccggttatcgatctttcgccg
ggcgatatggcgattttttcgtcctgggcaattccgggcaatgaaaaggccgtcctcgat
atccaaaataagctcgtggacaaaggtgtcgaaatcgtcaccggtcgcgacgaaatgatt
catgtatcgggtcatccccgccgtcatgaactcgcccagctttatgattggctcaagccc
gatatcctcgttcccgttcacggcgagccgatgcacctggaggcccacgcagccttcgcg
cgggaaaaagggatcaagacggtcgtttcgatccgcaatggcgatatggtccaactgttc
cccaacaccaagcatcaccgtggtgaagtgcgcacgggagtcctctatcttgacggcaac
ctcctgtgcacgcccgaggaatcgaacgtccgcgaccgccggcggctggcattcggtggc
gtcgccatcgtcagtctggttgtcaacgggcgcgggcagatcgtctcaggtcctgaattc
gatctggacggccttcccgatctggcagacgatgacgatccgctgagcgctgtcgctcat
tcggccgcacggggcgcgatcaaaagttttcccgaaaagcgccgcaccgatacggggcgc
tttgccgaagccatccgccgcgctgtgcggtccgaactcaatgccgcctggggtcgcaag
cccatcgtcaaggtgttcgttcataaggtgtag
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