Pelagibacterium halotolerans: KKY_205
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Entry
KKY_205 CDS
T01645
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
phl
Pelagibacterium halotolerans
Pathway
phl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KKY_205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phl03019
]
KKY_205
03400 DNA repair and recombination proteins [BR:
phl03400
]
KKY_205
Enzymes [BR:
phl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KKY_205
Messenger RNA biogenesis [BR:
phl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KKY_205
DNA repair and recombination proteins [BR:
phl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KKY_205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
HHH
Helicase_Sgs1
GD_AH_C
Motif
Other DBs
NCBI-ProteinID:
AEQ50250
UniProt:
G4R7V5
LinkDB
All DBs
Position
complement(196588..198477)
Genome browser
AA seq
629 aa
AA seq
DB search
MGARFDFPRPPGSPVSMSLFSNATASDPAPADGLDILRSVFGLDAFRGQQQEVVEHVMAG
GDAVVLFPTGAGKSLCYQIPAIGRPGVGVIISPLIALMRDQVEALKQAGVRAAALNSSLT
PEENRNVRQALRDGQLDLLYVAPERLAATGFLDLLASVDIGLFAIDEAHCVSQWGHDFRP
EYRELAKLRELFPHVPRVALTATADPTTRADLIERLGLEDAQLFISSFDRPNIGYSIVER
SNARSQLLDFLGRHKGESGIVYCLSRAKVEAVAEFLTEKGIAALPYHAGLDAGVRARNQD
AFLKEDAVCLVATVAFGMGIDKPDVRYVAHMDLPSSIEAYYQETGRAGRDGQPSEAWMCY
GLSDVSQRRRMIAEGNAPDDVKRLENNKLSALLGVCETAGCRRQAVLAHFGETHQGNCGN
CDTCINPVDSWDGTEAANKVMSSIYRTGQRFGAAHVIDVVMGKATEKVEKFRHQHLPVFG
VGQDISVKTWRSVVRQLTAMGLVHVNHEAHGALYLDEGARAVFRGERTVMLRRDPERKKS
DTNRALAGGETLSAEAEAVFERLRRKRREIASAQGVPPYVVFQDTTLRAMAQRLPATLDE
LRALPGVGDAKLERYGTAFLTEIGRTEQP
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgggcgcgcgattcgatttccccagaccgccgggctctcctgtctccatgtcgcttttt
tccaacgctacggcttccgatcctgcgccggccgatgggcttgatattttgcggtcggtg
ttcgggctcgatgcgtttcgcgggcagcaacaagaggttgtcgaacacgtcatggctggc
ggagacgccgttgtgctgtttcccacaggggcgggaaaatcgttgtgctatcagatcccg
gccatcgggcgcccgggggtcggcgttatcatatcgccgctcatcgcgctgatgcgcgat
caggtcgaggcgctcaaacaggcaggcgtccgggccgccgcactgaactcatcgctgacg
cccgaagagaaccgcaacgtgcgccaggcactgcgcgacgggcaactcgatcttctctac
gtcgcgcccgagcgcctggcggcgacggggtttctcgatcttctcgccagcgtcgacatc
ggactgtttgcaatcgatgaagcccattgcgtcagccaatgggggcacgatttccggccc
gagtatcgcgagctggccaaactgcgcgaactgtttccacatgtgccgcgggtggcgctg
accgcaacggcggacccgacaacccgggccgatctgatagaacggctgggactggaggat
gcccagctcttcatttcgagcttcgatcggcccaatatcggctattcgatcgtcgagcgg
tccaatgcacgcagccaactgctcgattttctgggtcgccacaaaggcgaaagcggtatc
gtctattgcctgtcgcgcgccaaggtcgaggcggtcgccgagtttcttaccgaaaagggc
attgccgccctgccctatcacgcagggctcgatgcgggcgttcgggcgcgcaatcaggac
gcgttcttgaaggaagacgcggtgtgtctggtggcgacggtggcgttcggaatggggatc
gacaagcccgatgtacgctatgtggcgcatatggatctgccctcgtccattgaggcctat
tatcaggaaacgggccgggccggacgcgacggacaaccctctgaagcctggatgtgttac
gggctgtccgatgtcagccagaggcggcgcatgatcgccgaaggcaatgcgcccgacgac
gtaaagcggctggaaaataacaaactcagcgctctgcttggcgtttgcgagactgcaggg
tgccggcggcaggcggttctggcccatttcggggaaacccatcagggcaattgcggcaac
tgcgacacctgcatcaatccggtcgatagctgggacggcaccgaggcggccaacaaggtg
atgtcctcgatctatcgcacgggccaacggttcggcgccgcccatgtgatcgatgtggtg
atgggcaaggccaccgagaaggttgaaaaattcaggcaccagcatttgccggtgtttggc
gtcgggcaggacatttccgtcaagacctggcgctcggtcgtccgccagttgacggccatg
gggctggtgcatgtgaaccacgaggctcatggcgcgctctatctcgacgaaggggcgcgg
gcggtgtttcgcggcgagcggacagtgatgttgcggcgcgatcccgagcgcaaaaaatcg
gacaccaatcgcgcgctggcgggcggggagacgctatcggccgaggccgaagccgtattc
gagcggttgcggcgcaagcggcgcgaaatcgcttcggcacagggcgttccaccctatgtc
gtgtttcaggacacgacgctgcgggccatggcccagcggctgccggcgacgcttgatgaa
ttgcgcgccctgccgggcgtgggagacgccaagcttgagcgctatggcacggcatttctg
acggaaatcgggcgaacggagcagccatga
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