Pelagibacterium halotolerans: KKY_2888
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Entry
KKY_2888 CDS
T01645
Name
(GenBank) ATP-dependent RNA helicase, DEAD/DEAH box family
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
phl
Pelagibacterium halotolerans
Pathway
phl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KKY_2888
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phl03019
]
KKY_2888
03009 Ribosome biogenesis [BR:
phl03009
]
KKY_2888
Enzymes [BR:
phl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KKY_2888
Messenger RNA biogenesis [BR:
phl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KKY_2888
Ribosome biogenesis [BR:
phl03009
]
Prokaryotic type
rRNA helicases
KKY_2888
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
Cas3-like_C_2
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
AEQ52883
UniProt:
G4RED8
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All DBs
Position
2877782..2879602
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AA seq
606 aa
AA seq
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MSSDIDHAPADLPASIHAALASALTGHGYTQLTPVQTAMLDPGHADADLLVSAQTGSGKT
VAFGIAIAPTLLGDAERFGPAQTPLGLIIAPTRELALQVQRELDWLYADAGIRIATCVGG
MDMRTERRALDRGAHLVVGTPGRLRDHITKGALDLSAMRAVVLDEADEMLDLGFRDDLEF
ILAASPEARRTLLFSATVPRAIADLAKTYQRDAVRVATTAPTEQHADIDYQLMVVHRDER
EHAIINTLLASDSTSALVFCHTREAVRHLAARLTNRGFAAVALSGELAQSERSSALQAMR
DGRAHVCVATDVAARGIDLPNLDLVIHADIPSNPATLLHRSGRTGRAGRKGVCVLIVPEH
RRKAASRVLALAKLSATTIAAPSIADIEAKYRRQILDAAVSAPMPEAEENQFVAELLGKV
SPEQLAVAFLRQQLASRPVPEETASVSLSGDGGKSRRRDKRAEGGPAYDPMAPRDPRGPD
MVGGVWFTLSLGRKHRADPKWLLPMICKAGGVTKRDVGSIKIDDTETRFEIAADKADDFA
RHVKRGTGLERGITVTPAGHKSSKPPRAREGFEPKFKPRPKHKTGPGDAPRPAKTGSKGY
GKKGRK
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgtcatctgatatcgatcacgcgccggcggatttgccggcatccatccatgctgcgctc
gccagcgcactcaccggccatggctatacccaactcacgcccgtccagacggcaatgctc
gatcccgggcacgcagacgccgacctgctggtgtccgcccagacaggatcgggcaagacc
gtggccttcggcattgccatagcgcccaccctgctcggtgacgccgaacggttcggcccc
gcgcaaaccccgctcggccttatcatcgcgccgacccgggagttggcgctgcaggtgcaa
cgcgaactcgattggctctatgccgatgccggcatccgtatcgccacctgcgtgggcggc
atggacatgcgcaccgagcgaagggcgctcgatcgcggcgcgcatcttgtggtgggcacg
cccggccggttgcgcgatcacatcaccaagggggcgctcgatttgagcgccatgcgcgcc
gtggtgctcgacgaagccgacgaaatgctcgatctgggctttcgtgacgatctcgaattc
atccttgccgcttcccccgaggcccggcggacgctgttgttctcggccacggtcccgcgc
gctatcgccgatctggccaagacctatcagcgcgatgctgtgcgcgtggcgacgaccgcg
ccgaccgagcagcacgccgacatcgactaccagctcatggtcgtccaccgcgacgagcgc
gagcacgcgatcatcaacaccctgctcgcctccgacagcaccagcgcactggtgttctgc
cacacccgcgaggccgtgcgccatctggcggcaaggctcaccaatcgcggctttgccgcc
gtggcgctttcgggcgaattggcccagtccgagcgctccagcgccttgcaggccatgcgc
gacggacgcgcccatgtctgcgttgccaccgacgttgcggcgcgaggcatcgatctgccc
aatctcgacctcgtgatccacgccgatattccttccaatcccgcaacgcttttgcaccgg
tcggggcgcaccggacgggccgggcgcaagggcgtttgcgtgctgatcgtccccgagcat
aggcgcaaggcggccagccgtgtgctggccctggccaagctttcggccaccacaatcgcc
gcgccgagcatcgccgacatcgaagcgaaatatcgccggcagattctggacgccgccgtc
tccgcaccgatgcccgaagccgaggagaaccaattcgtggccgagcttttgggcaaggtt
tcgcccgagcaactggccgtggcgtttctgcgccagcaactggccagccgccccgttccc
gaggaaaccgcgtcggtctcgctttcgggcgacggtggaaagtcaaggcggcgcgacaag
cgcgctgaaggcgggccggcatatgatcccatggcgccgcgcgacccgcgcggacccgac
atggttggcggcgtctggttcaccctttcgctggggcgcaagcatcgggccgatcccaaa
tggctgctgcccatgatctgcaaggcgggcggggtgacaaagcgcgacgtcggctcgatc
aagatcgacgacaccgaaacccgctttgaaatcgccgccgacaaggccgatgatttcgcc
cggcatgtcaagcgcggaacgggcctcgagcgcggcattaccgtaacgccggcgggacac
aaatcctcaaaaccgcctcgcgcccgtgaagggttcgagcccaaattcaagcctcggccc
aagcacaaaaccggacccggcgacgcgccgcgccccgccaagaccggctccaagggatat
ggcaagaagggacggaagtag
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