Pelagibacterium halotolerans: KKY_3436
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Entry
KKY_3436 CDS
T01645
Name
(GenBank) ribonuclease D related protein
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
phl
Pelagibacterium halotolerans
Brite
KEGG Orthology (KO) [BR:
phl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
phl03016
]
KKY_3436
Enzymes [BR:
phl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
KKY_3436
Transfer RNA biogenesis [BR:
phl03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
KKY_3436
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
AEQ53423
UniProt:
G4R8L8
LinkDB
All DBs
Position
complement(3408973..3409590)
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AA seq
205 aa
AA seq
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MSVRLHKGDLPDLSRYTGRQVAIDTETMGLNPARDRLCVVQLSPGDGTADVVQILPGQTE
APNLAALLADATKTKLFHFARFDMAALFAAFGVMTTPVYCTKIASKLVRTYTDRHGLKDL
SRELLGVDMSKQQQSSDWGAEMLSQAQLDYAASDVLYLHDLRRHLDRMLAREGRAEMAKA
CFDFLPTRAQLDLAGWPEIDIFAHS
NT seq
618 nt
NT seq
+upstream
nt +downstream
nt
atgagcgttcgactgcacaagggcgatctgcccgacctttcccgttacaccggacggcag
gtggccatcgataccgagacgatgggcctcaatccggcacgcgaccggttgtgcgtcgtg
cagctttcgccaggcgacggcacggccgatgtggtccagattcttccgggacagaccgaa
gcacccaaccttgcggcgctgctggccgacgcgaccaagaccaagctctttcatttcgcg
cgcttcgacatggcagcgctttttgccgcgttcggcgtgatgaccacgccggtctattgc
accaagatcgcctcgaaactggtgcgaacctataccgaccggcacgggctcaaagatctt
tcgcgcgagcttttgggcgtcgatatgagcaagcagcagcaatcgtccgattggggggcg
gaaatgctgagccaggcccagctcgattacgcagcgtcggacgtgctctatctgcacgat
ctgcgccggcacctggaccggatgctggcgcgcgaagggcgggccgaaatggcgaaggcg
tgctttgatttcctgcccacgcgcgcccaactcgatctcgccggctggcccgagatcgac
attttcgcccacagctag
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