Pelagibacterium halotolerans: KKY_3846
Help
Entry
KKY_3846 CDS
T01645
Name
(GenBank) excinuclease ABC subunit A paralog of unknown function
KO
K03701
excinuclease ABC subunit A
Organism
phl
Pelagibacterium halotolerans
Pathway
phl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
phl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KKY_3846
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phl03400
]
KKY_3846
DNA repair and recombination proteins [BR:
phl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KKY_3846
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KKY_3846
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_DNA-bind
AAA_21
AAA_16
DnaJ_CXXCXGXG
nSTAND1
AAA_29
DUF4350
RsgA_GTPase
Viral_helicase1
AAA_15
MCR
Motif
Other DBs
NCBI-ProteinID:
AEQ53828
UniProt:
G4RD78
LinkDB
All DBs
Position
complement(3833440..3836100)
Genome browser
AA seq
886 aa
AA seq
DB search
MKSKDIHATTPATDHGHTRPPACVQVRGARQNNLKNIDVDVPRDAFVVFTGISGSGKSSL
AFGTLYAEAQRRYLESVAPYARRLIDQAGVPEVDAIDGLPPAVALQQQRGSANARSSVGS
VTTLSSLVRMLYSRVGEYPRHQPMLYAEDFSPNTVAGACATCHGIGRVYDATEETMVPDD
SLTIRDRAIAAWPTAWHGQNLRDILVSLGYDVDTPWRDLPKKDRDWILFTEETPTVPVYA
GLTPEQTRTALKRRMEPSYQGTFTGARRYVLETFANTKSALMKKRVSQYIIGRDCPTCDG
KRLKREALSVKFAGLDIAEFGDLTVFKLKDLLMPVAHGEYGAVSDTSKGHVLEKAAREAA
VEQRVAAGGSAHKSAPDIRRTPNLSDEKRIAAQRLACELIERLEPLIDLGLGYISLDRST
PSLSSGELQRLRLATQLSSQLFGVVYVLDEPSAGLHPADGEALLTILERLKAAGNSLFVV
EHDLDVIRRAEWLVDVGPGAGEKGGEVLYSGPIEGLADVETSITRRYLFAEPLRSERTPR
DPKAWLRLEGIRRNNLHGLDVEFPIGCFTAVTGVAGSGKSSLVSQALPELVTEHLGGSPV
AEEGDIDPLLDVAQNVTEGRIVVGMEHVRRLVRVDQKPIGRTPRSNLSTYSGMFDHVRRI
FADTPLARRRHYSPSRFSFNVAQGRCPVCEGEGYVMVELLFLPSVFAPCSTCHGSRYNPQ
TLEVEWNGRNIAQVLELTVDDACDFFAGEASVMRSLDVLREIGLGYLRLGQPATELSGGE
AQRIKLATELQRAQRGNTIYILDEPTSGLHPSDADRLMQHLQGLVDAGNTVVVVEHDMRA
ITQADWIIDLGPGAGEDGGRIVASGVPGVVAEAEGSLTARYLKAAL
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
ttgaagagcaaggatattcacgcgacgacgccggccaccgatcatgggcatacgaggccg
cccgcttgcgtgcaggttcgcggcgcgcgccagaataacctcaaaaatattgacgtcgat
gtaccgcgcgacgccttcgtggtgttcaccggcatatcgggctcgggcaagtcatcgctc
gcgttcggcaccctttatgccgaagcccagcggcgttatctagaatcggttgcgccctat
gcccgtcgcctgatcgaccaagccggcgtgccggaggtcgacgcgatcgacggtttgccg
cctgcggtcgcgttgcagcagcagcgcggctcggccaacgcgcgatcctcggtcggcagc
gtgacgacgctctccagcctggtgcggatgctctattcgcgcgtcggcgaatatccgcgc
catcaacccatgctctatgcggaggatttctcccccaacacggtcgcgggggcctgcgcg
acctgccacggcatcggccgcgtatatgacgcgaccgaagagacgatggtgcctgacgac
agcctcaccattcgcgaccgggcgatcgccgcttggccgaccgcctggcatggccagaac
ctgcgcgatatcctcgtttcgctcggctatgacgtcgatacaccatggcgcgacctgccg
aaaaaggatcgcgactggatcctctttactgaagagacgccgacggtgccggtctacgcg
ggcctgacgcccgaacagacccggacggcgctcaagcgccgcatggagccgagctaccag
ggcaccttcactggcgcgcgccgctatgtgctggaaaccttcgccaacactaaaagcgcg
ctgatgaagaagcgcgtttcgcaatatatcatcggccgcgattgcccgacctgcgacggc
aagcgcctgaagcgcgaagccctgtcggtcaaattcgccggccttgacattgccgagttc
ggcgacctgacggtgttcaagctgaaggacttgctgatgcccgtcgcgcatggcgaatat
ggggcggtctccgacacctcaaagggccatgttctggaaaaagcggcccgcgaagcagcg
gtcgaacaacgggttgccgcaggcggctctgcgcacaagagcgcgcccgacatacgccgt
acgccaaatctctccgacgagaagcggatcgccgcccaacgccttgcctgcgaattgatc
gagcggctcgagccgctgatcgatcttggccttggctacatatcgctcgaccgcagcacg
ccatcgctctcctccggagagctgcagcgcttgcggcttgccacgcaattgtcgtcacag
cttttcggcgtggtctatgtgcttgacgagccttcggcggggttgcaccccgcagatggc
gaagccttgctgactatcctcgagcgtctcaaggcggcgggcaactccctgttcgtcgtc
gaacatgatctcgacgtgatccgccgcgcggaatggctcgtcgatgtcgggccaggagcc
ggggaaaagggcggtgaagtcctctacagcgggccgatagaggggcttgccgacgtcgag
acttcgatcacccgccgctacctgttcgcagagccgctccgcagtgagcgcacaccgcgc
gatcccaaggcatggctacgcctggaagggatcaggcggaacaatctccatggtctcgac
gtcgagtttcccatcggctgcttcaccgctgtcaccggcgttgcgggatcgggcaaatcc
agtcttgtcagtcaggcgctgcccgagctcgtcacggaacacctcggcggctcccccgtg
gccgaggagggggatatcgatccgctgctcgatgttgcgcagaacgtcactgaaggacgc
attgttgtaggcatggagcatgttcgcaggctggtgcgggtcgatcagaaaccgatcggc
cgcacgccgcgctcgaacctatccacctacagcggcatgttcgaccatgtgcgacggatc
ttcgctgatacgccgctcgcccgccggcggcactatagcccgagcaggttctcgttcaac
gtcgcgcaagggcgctgccctgtgtgcgagggcgagggatacgtcatggtggagctgctg
ttcctgccaagcgtttttgcgccgtgctcgacctgccatggctctcgctacaacccgcaa
acgctcgaagtcgaatggaacgggcgcaatatcgcccaggtgctcgaactgacggtggac
gatgcgtgcgatttcttcgctggcgaggcatctgtgatgcgctccctcgacgtgttgcgg
gagatcggtcttggctatctgaggctcggtcagccggcgaccgagctgtctggcggggag
gcgcagcgcatcaagctggcgactgaactgcaacgcgctcaacgcggcaacacgatctac
atcctcgacgagccaacttcggggcttcacccctccgatgcggaccggctgatgcaacat
ctgcagggcctcgtagacgccggcaataccgtcgtagtcgtcgaacatgacatgcgcgcc
atcacacaggcggactggatcatcgacctgggaccgggggccggggaagatgggggccgt
atcgttgccagcggcgtccctggcgtcgttgcggaagcggaaggcagtctcaccgcccgc
tatctcaaggcggctctgtag
DBGET
integrated database retrieval system
