Phycisphaera mikurensis: PSMK_07360
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Entry
PSMK_07360 CDS
T01800
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
phm
Phycisphaera mikurensis
Pathway
phm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSMK_07360 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phm03021
]
PSMK_07360 (rho)
03019 Messenger RNA biogenesis [BR:
phm03019
]
PSMK_07360 (rho)
Transcription machinery [BR:
phm03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PSMK_07360 (rho)
Messenger RNA biogenesis [BR:
phm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PSMK_07360 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_24
AAA_25
DUF3086
Spore_III_AA
S1CSD-TOTE-2
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
BAM02895
UniProt:
I0ICA7
LinkDB
All DBs
Position
826326..827933
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AA seq
535 aa
AA seq
DB search
MARSPKKPEPDADTPEAPAAEAPAKKPRKKSPRKKAPAAASAEREPVARADDPGIRAAEA
AVAEHEADQRKAEEARDAEGEASDKPAKPRVSGSTDEQLEEETQNRYENAKRDELTIRDL
QDLPVGELRDRAEIAGIDGYGTLGKSQLLSALLNKHAARHGLMYGEGVLEVLPDGFGFLR
SPDNHYLACPDDIYVSPSQIRRFGLKMGHEVHGTIRPPKESERYFALLRVDAINGAHPQD
LSDKTPFESLEARHPTQRFLMESPGEGSEDAEMRIVDLVAPVGKGQRSLIVAPARTGKTR
LMQMMATSIVENNTNTRVFVVLIDERPEEISDWKKAVPESVEIVASTFDESPARHVQVCE
MVIERARRMVEYGFDVVVMMDSMTRMARGYHADHPHSGRTMQGGLDAQAMQRPKKFFASA
RDVEGGGSLSIIATALKDTGVKVDEVIFDMFKQTANSEIHLDRRLAERRLFPAIDIAASG
TRREELLMDRTELRLVNRLRKVLSDMNIVEAMELLKSRLGKYRSNAEFLLSMSKE
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atggcacgctcccccaagaagcccgaacccgacgcggacacccccgaggccccggccgcc
gaggcgcccgccaagaagccccgcaagaagagcccgaggaagaaagcgcccgcggccgca
tccgcggagcgcgagccggtggcgagggccgacgatccgggcatccgcgccgccgaggcc
gccgtggcggagcacgaggccgaccagcggaaggcggaggaagcgcgcgacgcggagggg
gaggcgagcgacaagcccgcgaagccgcgcgtgagcggctccaccgacgagcagctcgag
gaggagacgcagaaccgctacgagaacgcgaagcgcgacgagctgacgatccgcgacctg
caggatctgcccgtgggcgagctccgcgatcgggcggagatcgccggcatcgacggctac
ggcaccctgggcaagagccagctgctctcggccctgctcaacaagcacgccgcccgccac
gggctgatgtacggcgagggcgtgctcgaggtcttgcccgacggcttcggcttcctccgc
agccccgacaaccactacctcgcctgccccgacgacatctacgtcagcccctcgcagatc
cgccgcttcggcctgaagatgggccacgaggtgcacggcaccatccggccgccgaaggag
agcgagcgctacttcgcgctcctccgcgtcgacgccatcaacggcgcccacccgcaggac
ctctccgacaagacgcccttcgagagcctcgaagcccgccacccgacgcagcgcttcctg
atggagtcgcccggtgagggctccgaagacgcggagatgcgcatcgtcgacctcgtcgcg
ccggtgggcaagggccagcgcagcctgatcgtcgcgcccgcccgcaccgggaagacgcgc
ctgatgcagatgatggcgacctccatcgtcgagaacaacacgaacacccgcgtcttcgtc
gtgctcatcgatgagcgtcccgaggagatctcggattggaagaaggcggtgcccgagtcc
gtcgagatcgtcgccagcaccttcgacgagagcccggcgcggcacgtccaggtctgcgag
atggtcatcgagcgggcccgccgcatggtcgagtacggcttcgacgtggtcgtgatgatg
gactcaatgacgcggatggcccgcggctaccacgccgaccacccgcactcgggccgcacg
atgcagggcgggctggacgcccaggcgatgcagcggcccaagaagttcttcgcctcggcg
cgggacgtcgagggcggcggttcgctctcgatcatcgcgacggccctcaaggacaccggc
gtgaaggtcgacgaggtgatcttcgacatgttcaagcagaccgccaacagcgagatccac
ctcgaccgccgcctcgcggagcgtcggctcttccccgccatcgacatcgccgcctcgggc
acccgccgcgaggagctgctgatggaccgcacggagctgcggctggtgaaccgcctgcgg
aaggtcctcagcgacatgaacatcgtcgaggcgatggagctgctgaagtctcgcttgggc
aagtaccgctccaacgcggagtttctgctgtcgatgagcaaggagtag
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