Phycisphaera mikurensis: PSMK_10520
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Entry
PSMK_10520 CDS
T01800
Name
(GenBank) 2',3'-cyclic-nucleotide 2'-phosphodiesterase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
phm
Phycisphaera mikurensis
Pathway
phm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSMK_10520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phm03019
]
PSMK_10520
Messenger RNA biogenesis [BR:
phm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PSMK_10520
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_2
KH_KhpA-B
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
BAM03211
UniProt:
I0ID73
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All DBs
Position
complement(1242406..1244040)
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AA seq
544 aa
AA seq
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MNTDPLTPSLAVLSEPQNLWLVLFALAGGLILGYVVSRQSGARSLAATRREIETKLAAAE
QEGRIRAKQIELDARNAVAERREGLEKELQGDRDKLVESQRRLTKREDLLDTKLATLAAR
ERAMGEQDERHERLKAALAKREDRINGCERELAAERAAFDKEHRETLLRAARMSEEEAKR
EALTALTNACQEEAAAIVKASQERAAADAKQEAMRITLEAIQRYASEHSAESTSNTVKIE
DDAMKGRVIGREGRNIRAFEAAMGVDVVVDDTPGIITVSCFDPVRRATATEALTILLKDG
RIHPARIEEVVEKVSEDFTERIQKFGRDAANEVHLPGLHPRVIEAMGRMHYRTSYGQNIL
RHSVEVAFLCQVIADELGLDGALARRCGFLHDLGKAMDHDVEGGHPRIGADFLRKHGERS
EAVLNAVEGHHNDVIATTPYTPVVMAADAISGARPGARRETMEKYVKRLRELEGIARRTR
GVREAYAIQAGREVRVIVDPHGIDDAGCHVMARSIAQRVSDEMSFPGEIKITVMREMRTV
DFAR
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atgaacaccgaccccctcacgccctcgctggcggtcctcagcgagccgcagaacctctgg
ctcgtgctgttcgcgctcgccggcggcctcatcctcggctacgtggtcagccggcagtcc
ggcgcccgcagcctcgcggccacgcggcgggagatcgagaccaagctcgcggccgccgag
caggaaggccgcatccgcgccaagcagatcgagctcgacgcccggaacgcggtcgccgag
cggcgggagggcctggagaaggagctgcagggcgaccgcgacaagctcgtcgagtcgcag
cggcggctgaccaagcgggaggacctgctcgacacgaagctggccaccctcgccgcccgg
gagcgggcgatgggggagcaggacgagcgccacgagcggctcaaggcggcgctggccaag
cgggaggaccgcatcaacgggtgcgagcgcgagctggccgccgagcgggcggcgttcgac
aaggagcaccgcgagacgctgctccgagccgcccgcatgagcgaggaggaggccaagcgc
gaggcgctgacggcgctgaccaacgcctgccaggaggaagccgccgccatcgtgaaggct
tcgcaggagcgggcggcggccgacgccaagcaggaggcgatgcggatcaccctcgaagcg
attcagcggtacgccagcgagcactccgccgagagcacgtcgaacacggtcaagatcgag
gacgacgcgatgaaggggcgcgtcatcggccgcgagggccgcaacatccgcgccttcgaa
gccgcgatgggcgtggacgtcgtggtggacgacacgccgggcatcatcacggtgtcctgc
ttcgacccggtccgcagggcgacggccaccgaggcgctcacgatcctgctcaaggacggc
cgcatccaccccgcccgcatcgaggaggtcgtggagaaggtcagcgaggacttcaccgag
cggatccagaagttcggccgggacgccgccaacgaggtccacctgcccggcctgcacccc
agggtgatcgaggcgatgggccggatgcactaccgcacgagctacgggcagaacatcctc
cgccactcggtggaggtcgccttcctgtgccaggtcatcgcggacgagctggggctcgac
ggggccctcgcccgccgctgcggcttcctgcacgacctgggcaaggccatggaccacgac
gtggagggcggccacccccgcatcggtgccgactttctgcgcaagcacggggagaggtcc
gaggcggtgctgaacgccgtcgagggccaccacaacgacgtgatcgcgacgacgccttac
acgccggtggtgatggcggcggacgcgatttcgggcgcccggcccggcgcccgccgcgag
acgatggagaagtacgtcaagcggctgcgcgagctcgagggcatcgcgcggcggacccgg
ggggtccgggaggcctacgccatccaggccggccgggaggtccgcgtcatcgtcgacccg
cacggcatcgacgacgcggggtgccacgtcatggcccgctcgatcgcgcagcgggtcagc
gacgagatgagcttccccggcgagatcaagatcacggtgatgcgcgagatgcggaccgtc
gacttcgcccgctga
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