Phycisphaera mikurensis: PSMK_12500
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Entry
PSMK_12500 CDS
T01800
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
phm
Phycisphaera mikurensis
Pathway
phm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSMK_12500 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phm03019
]
PSMK_12500 (rhlE)
Enzymes [BR:
phm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSMK_12500 (rhlE)
Messenger RNA biogenesis [BR:
phm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSMK_12500 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
AAA_22
AAA_19
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
BAM03409
UniProt:
I0IDS1
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All DBs
Position
1471223..1472659
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AA seq
478 aa
AA seq
DB search
MRRAGRSARASPHPRTALRFDDFALSPALLRNVAEAGYQTPSPIQAEAIPHVLGGRDVLG
CAQTGTGKTAAFALPIIHRITSAERHGGKRTRCLVLCPTRELAVQIADGFLGYARGMDLS
GALVFGGVGPNPQIAKLKRGAEVVVATPGRLLDLMNQGFADLSAVETLVLDEADRMLDMG
FIHDIRRIVKELPGKRQTLLFSATVPTEIRTLARKLLHDPVTITIEPDAPAAEKVDQSVR
FVEHGGKADLLAGLIRGSAGVAKPGEAGANGMHRTIVFTRTKHGADKLVKALKKHGIQSE
AIHGNKSQNARQRALENFRGTKTPVLVATDVAARGIDVDGITHVVNYDLTHEPETYVHRI
GRTARAGADGHAVSLCDREELAWLRAIEQLLGRRIAVEGEAPDWSFQRPGPPPKQGGNRG
GGPRGSQAPRGGGGSGGGRGPAARGGKGGGGRRKPGGGRRGGSGAGPRKGGRPGRGAG
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgcggcgggcgggccggtcggcccgcgcgtcgccgcacccaaggaccgccttgcgcttc
gacgacttcgccctgtcccccgccctcctgaggaacgtggcggaggccggctaccagacg
ccctcgcccatccaggccgaggccatcccgcacgtgctcggcggccgcgacgtgctcggc
tgcgcccagaccgggacggggaagaccgccgcgttcgcgctgccgatcatccaccgcatc
acctccgcggagcggcacggcggcaagcggacccgctgcctcgtgctctgccccacccgg
gagctcgccgtgcagatcgccgacggcttcctcggctacgcccgcgggatggacctctcc
ggcgcgctggtcttcggcggcgtcggccccaacccgcagatcgccaagctcaagcgcggg
gccgaggtggtggtcgccacgccgggccggctgctggacctcatgaaccagggcttcgcc
gacctctccgcggtcgagacgctggtcctcgacgaggccgaccgcatgctggacatgggc
ttcatccacgacatccgcagaatcgtcaaggagctgcccggcaagcggcagacgctgctg
ttctcggcgacggtccccaccgagatccgcacgctggcgcggaagctcctgcacgacccg
gtgacgatcaccatcgagccggatgcgcccgcggccgagaaggtcgaccagagcgtccgc
ttcgtggagcacggcggcaaggcggacctgctcgccgggctcatccggggcagcgcgggc
gtggcgaagcccggcgaggccggggccaacggcatgcaccgcacgatcgtcttcacgcgg
accaagcacggggccgacaagctggtcaaagcgctcaagaagcacggcatccaatccgag
gcgatccacggcaacaagagccagaacgcccggcagcgggcgctggagaacttccgcggg
accaagacgccggtgctggtcgccaccgacgtggccgcccggggcatcgacgtcgacggc
atcacccacgtggtcaactacgacctgacgcacgagcccgagacctacgtgcaccgcatc
ggccggaccgcgcgagccggggccgacggccacgccgtgagcctgtgcgatcgcgaggag
ctggcctggctgcgcgcgatcgagcagctgctcggccgcaggatcgccgtcgagggcgaa
gccccggactggagcttccagcggcccgggcccccgcccaagcagggcggcaaccgcggt
ggcggcccgcgtggcagccaagccccgcggggcggcggcggctcgggcggcgggcgtggc
ccggcggcgcggggcggcaagggcggcgggggccgccgcaagcccggcggcggccggcgc
ggaggatcgggcgccggcccgaggaaaggcggccgccccggccgcggcgccggctga
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