Phycisphaera mikurensis: PSMK_24270
Help
Entry
PSMK_24270 CDS
T01800
Symbol
dnaE
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
phm
Phycisphaera mikurensis
Pathway
phm03030
DNA replication
phm03430
Mismatch repair
phm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
phm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PSMK_24270 (dnaE)
03430 Mismatch repair
PSMK_24270 (dnaE)
03440 Homologous recombination
PSMK_24270 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phm03032
]
PSMK_24270 (dnaE)
03400 DNA repair and recombination proteins [BR:
phm03400
]
PSMK_24270 (dnaE)
Enzymes [BR:
phm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PSMK_24270 (dnaE)
DNA replication proteins [BR:
phm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PSMK_24270 (dnaE)
DNA repair and recombination proteins [BR:
phm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PSMK_24270 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
BAM04586
UniProt:
I0IH48
LinkDB
All DBs
Position
2877189..2881346
Genome browser
AA seq
1385 aa
AA seq
DB search
MTGAAPAKPPAAPAEDFVHLHLHSTYSLLDGGNRIDRLVARVAELGMTACAVTDHGNLFG
AVEFYNAAKRAGIKPILGVEAYVAPELEGRPSDRRNKEHSGTADGGFHLVLLAENQAGWS
NLRKLSSDSFLEGFYYKPRMDNQTLTQWSDGLIAINGHLGSSIAYHLVQYLRSGGGGNKP
EQKHWDAAVREAKWHLSVFKPNERGEPRFFLELQKHEEKLQRDINPLTVRLAEELDIPLV
CDNDAHFLTADDWDAHDTLCCISMGKGKGDESRMRYARDLYVKSPQEMWAAFGQDQPEAI
RNTRRIADRCNVEIDFEANHAPVVRIDTDLSGLPSDSEGALKVIDDFSRTCEHPPGSTAW
MKAFGETIRMEPFDEENDTDSPQELAKQCDGALRLLSEAGAIWRYGTRGFEGPVGATRRA
RMERELKVLKDKLISAYFVIVWDFTHEARRRDIPVLARGSGVGTMTGFALGLSNACPIEY
GLLFERFTDPDRTEYPDIDIDMCQDGRAELIQYVRDKYGHVAQIITFGTLKARAAIRDVG
RVHDLSLQDVDKVCKLIGDGLATTLDSAWKQNSDLAELCAVQPQVQGVYDTARRLENFHR
HAGVHAAGVIVATQPLDNIVPLYRPPGGNSGDGVTVTQWDGPTCEKVGLLKMDFLGLRTL
SIIERGKLLVKQSLPPEVITKAVLGPDAEHGAPDDEGLPVDVLDLERITYDDPRVLSLFA
RGETAGVFQFESGGMRSLLMAMKPDRLEDLIAANALYRPGPMELIPNYNARKHGREAVPK
VHEIVDRLTAETYGIMVYQEQVMQVLNELGGIPLRTAYSIIKAISKKKEKTINEARVDFV
AGAKERGVAEKDSGGLFDLILKFAGYGFNKSHSTGYAIVAYQTAYLKTHFPIHYMAAVLT
YESVSTDKVVEYIDACRSLKLPDPPAPSASAEHPAEGGTPKQAGVEVRPPDINLSDVAFT
VVYESGEERRADTGHIRFGLSAVKGVGEKAITSVIAERAKNGPFRGLFDFCERVDLRACN
KSTLDALIKCGAFDSLHGIEKRSACSDALEAAMKAGQRAAADKASGQMGMFGAPSPEPST
GVQAATAGGAAEPDLPASVPWTKKQTLEFEKDVMGMYVSSHPLHDHAGALHNFSSCAIAE
VDRLPADTPVVLGGMLSRVRGTVVKRGKSAGAKMAMITLEDDTGAKIDGVAFADTYAQCS
NHLQTDRVVLLAGKVDRRREEPNIVLDKVIPVEDAAEHLTRAVRIVIEEVTEADLPPGER
LPPAQAPEHVLTKLREVLRQAAQRIHNGGTPAGVSLELHVRGDGQGDDQVVEMRLGQARV
AVDEDLLAGVRAVLEDSPRHRARCVLEGPARVDVGDALKRYGDVASKGDLSFAMHDDGGQ
SIDRY
NT seq
4158 nt
NT seq
+upstream
nt +downstream
nt
atgaccggcgccgcccccgcgaagcccccggccgcccccgccgaggacttcgtccacctc
cacctgcactccacctactccctgctcgacggcggcaaccgcatcgaccgcctggtggcg
agggtggcggagctggggatgacggcctgtgccgtcacggatcacggcaacctcttcggc
gctgtcgagttctacaacgcggcgaagagagccggcatcaagccgatcctcggcgtcgag
gcctacgtcgcgcccgagctggagggccggccgtcggaccgccgcaacaaggagcactcc
ggcaccgccgacggcggcttccacctcgtgctgctcgccgagaaccaggccgggtggagc
aacctccggaagctcagctccgacagcttcctcgaaggcttctactacaagccgcgcatg
gacaaccaaacgctcacgcagtggagcgacgggctgatcgcgatcaacgggcacctgggc
tcgtccatcgcctaccacctggtgcagtatctccgcagcggcgggggtgggaacaagccg
gagcagaagcactgggatgcggcggtgcgggaagcaaagtggcacctctcggtgttcaag
ccgaacgagagaggcgagccccgcttcttcctggagctgcagaagcacgaggagaagctg
cagcgcgacatcaacccgctcacggtccgcctcgccgaagagctggacatcccgctggtc
tgcgacaacgacgcccacttcctcaccgccgacgactgggacgcgcacgacacgctgtgc
tgcatctcgatgggcaagggcaagggcgacgagtcgcggatgcgttacgcccgcgacctc
tacgtgaagagcccgcaggagatgtgggcggctttcggtcaggaccagcccgaggccatc
cgcaacacccggcggatcgccgaccgctgcaacgtcgagatcgacttcgaggcgaaccac
gcgccggtcgtgcggatcgacaccgacctctccggcctgccctccgattccgaaggcgcg
ctgaaggtcatcgacgacttcagccggacctgcgagcacccgcccgggtcgaccgcgtgg
atgaaggccttcggcgagacgatccggatggagcccttcgacgaggagaacgacaccgac
tcgccccaggagctcgcgaagcagtgcgacggggcgctgcggctgctctccgaggcgggc
gcgatctggcgctacggcacgcgcggcttcgagggtccggtgggcgccacccgccgggcg
cggatggagcgtgagctgaaggtcttgaaggacaagctgatctcggcgtacttcgtgatc
gtctgggacttcacccacgaggcccgccgccgcgacatcccggtgctcgcgcgtggctcg
ggcgtcggcacgatgaccggcttcgcgctggggctctccaacgcctgcccgatcgagtac
ggcctgctcttcgagcgcttcaccgatccggaccggaccgagtaccccgacatcgacatc
gacatgtgccaggacggccgcgccgagctgatccagtacgtccgcgacaagtacggccac
gtcgcgcagatcatcaccttcgggacgctgaaggcccgggccgccatccgcgacgtcggc
cgcgtccacgacctctcgctgcaggacgtcgacaaggtctgcaaactgatcggcgacggg
ctggccaccacgctggactcggcctggaagcagaacagcgacctcgccgagctgtgcgcg
gtgcagccgcaggtgcagggcgtgtacgacacggcccgccggctggagaacttccaccgc
cacgccggcgtgcacgccgcgggcgtgatcgtggcgacgcagccgctggacaacatcgtc
ccgctgtaccgcccgccgggcggcaacagcggcgacggcgtgaccgttacgcagtgggac
ggcccgacctgcgagaaggtgggactcctcaagatggacttcctggggctgcggacgctc
tcgatcatcgagcgcggcaagctgctggtgaagcagagcctccccccggaggtcatcacc
aaagcggtgctcggccccgacgccgagcacggcgcccccgacgacgagggcctgcccgtg
gacgtgctcgacctggagcgcatcacctacgacgacccgcgcgtgctgtcgctgttcgcg
cgcggcgaaacggccggcgtgttccagttcgagtccggcgggatgcgctcgctgctgatg
gcgatgaagcccgaccggctggaggacctcatcgcggcgaacgcgctctaccggcccggc
ccgatggagctgatccccaactacaacgcgcggaaacacgggagagaggcggtgccgaag
gtccacgagatcgtcgaccggctgaccgccgagacctacgggatcatggtctaccaggag
caggtgatgcaggtgctcaacgagctcggcggcatcccgctccgcaccgcgtactcgatc
atcaaggcgatctccaagaagaaggagaagacgatcaacgaagcccgcgtcgacttcgtc
gcgggcgcgaaggagcgcggcgtcgcggagaaggactccggcgggctgttcgacctgatc
ctcaagttcgccggctacggcttcaacaagagccactccaccggctacgcgatcgtcgcg
taccagacggcttacctcaagacgcacttccccatccactacatggcggcggtgctgacg
tacgagtcggtgagcaccgacaaggtcgtcgagtacatcgacgcctgccggagcctgaag
cttcccgatcccccggctccgtcggccagcgccgagcatcccgccgaaggcgggaccccg
aagcaggccggcgtggaggtgcggccgccggacatcaacctctccgacgtcgcgttcacg
gtcgtgtacgagagcggcgaggagcgccgggccgacaccggccacatccgcttcgggctc
tccgcggtcaagggcgtgggcgagaaggcgatcaccagcgtgatcgccgagcgggcgaag
aacgggcccttccgcgggctcttcgacttctgcgagcgtgtggacctgcgggcctgcaac
aagagcacgctggacgcgctcatcaagtgcggcgccttcgactcgctgcacgggatcgag
aagcgatccgcctgctcggacgcgctcgaggccgcgatgaaggccggccagcgcgccgcc
gccgacaaggccagcggccagatgggcatgttcggggcaccctcccccgaaccgagcacg
ggcgtgcaggcggccacggccgggggagcggccgagcccgacctgcccgcctcggtgccg
tggaccaagaaacagacgctggagttcgagaaggacgtgatgggcatgtacgtgtcgtcg
cacccgctccacgatcacgcgggcgcgctgcacaacttcagctcctgtgcgatcgcggag
gtggaccgcctgcccgccgacacgccggtggtcctgggcggcatgctctcccgcgtccgc
ggcacggtggtcaagcgtggcaagagcgccggcgccaagatggcgatgatcacgctcgag
gacgacaccggggccaagatcgacggcgtcgccttcgccgacacctacgcccagtgcagc
aaccacctgcagaccgaccgcgtcgtgctgctggccggcaaggtggaccgccgccgcgag
gagcccaacatcgtgctcgacaaggtcatccccgtcgaggacgccgcggagcacctgacc
cgggccgttcggatcgtcatcgaggaggtcaccgaagccgaccttccccccggcgagcgt
ctgcccccggcgcaggcccccgagcacgtgctgacgaagctgcgcgaggtgctgcggcag
gccgcgcagcggatccacaacggcggcacgcccgccggcgtgtcattggagctgcacgtc
cgcggcgacgggcagggggacgaccaggtggtggagatgcggctgggccaggcccgcgtc
gccgtcgacgaggatctgctcgccggcgtccgcgccgtgctcgaggactcgccccggcac
cgcgcccgctgcgtgctggagggaccagcccgcgtcgacgtcggcgacgccctgaagcga
tacggagacgtcgcgagcaagggcgacctgagcttcgccatgcacgacgacggcgggcag
agcatcgatcgctactga
DBGET
integrated database retrieval system
