Phycisphaera mikurensis: PSMK_24440
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Entry
PSMK_24440 CDS
T01800
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
phm
Phycisphaera mikurensis
Pathway
phm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
phm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PSMK_24440 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phm03021
]
PSMK_24440 (rpoC)
03400 DNA repair and recombination proteins [BR:
phm03400
]
PSMK_24440 (rpoC)
Enzymes [BR:
phm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PSMK_24440 (rpoC)
Transcription machinery [BR:
phm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PSMK_24440 (rpoC)
DNA repair and recombination proteins [BR:
phm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PSMK_24440 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
BAM04603
UniProt:
I0IH65
LinkDB
All DBs
Position
complement(2899889..2904397)
Genome browser
AA seq
1502 aa
AA seq
DB search
MQQQNSEQLYDRVNDYSAVKINLASPNDIRAWSYGEVKKPETINYRTYKPEKDGLFCERI
FGPEKDYECACGKYKGTKYKGIICDRCNVKVTHSRVRRKRMGHLNLAAPIVHIWFFKAIP
SHLGNLLGMKTSDLEKVIYFQDYVVTDPGDTPLKMQQVITEDEYRQYASEYGSGFTAMMG
AEAIKELLAELDLHATAAELRADLEATRSKQKTKDLSKRLKIVEQIRGSENDPTWMVMDV
VPVIPPDLRPLVLLDSGNFATSDLNDLYRRIINRNNRLKKLMDLNAPEVIIRNEKRMLQQ
SVDALFDNGRCRRPVLGASNRPLKSLTDMIKGKQGRFRENLLGKRVDYSARSVIVVGPEL
KLHQCGLPKKIALELFQPFIIAKLKDHGLADTIKSAKKMLERRDPEVWDILEEVIDQHPV
MLNRAPTLHRMGIQAFEPVLVEGNAIKIHPLVCSGFNADFDGDQMAVHLPLSVEAQAEAS
VLMLSPHNIFSPANGSPIISPGQDIVYGVFYITKMPETLDPELEKELVNRSANLAPGMVE
KMKSVLDFKDPAEALLAYDLKKVGIHTPIVVRLPGDRYGGIVTDERGPVSPLPETHRIVT
SVGRLLFNDIIAQGMPYYNTALGKKGCSRAVADAYSFNGRPATIALLDAMKEIGFKRATT
AGLSFGITDLRIPKKKHEIIAATQAKVDRVEKAHNGGAITERERYNQLLDLWTHCREEVT
KEVVYEMSHDVRDAEGRKLELEDPEGHRYMNAVWIEIESGARGSIGQLQQLAGMRGLMAK
PSGEIIETPIKANAREGLNVLEYFSSTHGARKGLADTALKTADSGYMTRKLCDVAQNVFT
SLHDCGSRNGITKRAIMKGDEVEVSLKERIFGRVARETILDPQDGSVIVSENEMISAEAA
DRIDGIGITSVMVRSPLTTNAQTGCSVLDYGMDMSTGKLAELGLAIGIIGAQSIGEPGTQ
LTMRTFHTGGVATTTAADTGFVASGAGTVRIVDASEVPTTDDDGNEVMVTLKRNGEMILE
DKKGNELERFKLPYGGYLLVENGQDVKKGASLVRWDPHRVPILAEKGGRVKFEDIILNET
VRTEKQSQAQASKGGRKAGGGGEQMVVIEHKGVRHPRINVVDEKGTIMDFHYLPAKARIE
VTDGQEIAAGTMLARQPKEASGSADIVGGLPRVTEIFEARKPKDSGVMSDIEGEVEIQQD
KRKGKMTITVRSESGLEVDHHVPQDRHLLVHTGDRVQAGDPVVEGPLVPQDILRVRGEEA
LFNYLIEEVQNVYRAQGVTINDKHIEVILAQMLRKIRVDNPGDTDLLPNEVVDKYRFRKA
REAVAGAGKVKDPGDSNLRVNQVIGRGELKDLRSKLEAEGKTPPVVVKARPATGTTLLLG
ITKAALQSESFLSGASFQETTKVLTEAALAGKSDPLMGLKENVLLGHLIPVGTGFEDYQD
LRIKKLVHPPVQEELTVEEETAAAIELAVTEGAIAPDQIETTIGDSDRFKELIGEEQEAA
AS
NT seq
4509 nt
NT seq
+upstream
nt +downstream
nt
atgcagcagcagaacagcgaacagctttacgaccgcgtcaacgactactccgcggtcaag
atcaacctcgccagccccaacgacatccgggcctggtcctacggcgaggtcaagaagccc
gagacgatcaactaccgcacgtacaagcctgagaaggacgggctgttctgcgagcggatc
ttcgggcccgaaaaggactacgagtgcgcctgcggaaagtacaagggcacgaagtacaag
ggcatcatctgcgaccgctgcaacgtgaaggtcacgcacagccgcgtccggcgcaagcgg
atgggccacctgaacctcgccgcgccgatcgtccacatctggttcttcaaggcgatcccc
tcgcacctgggcaatctgctgggcatgaagaccagcgacctggagaaggtcatctacttc
caggactacgtggttacggaccccggcgacaccccgctgaagatgcagcaggtcatcacc
gaggacgagtaccgccagtacgccagcgagtacggctcgggcttcaccgccatgatgggc
gccgaggccatcaaggagctcctcgccgagctcgacctgcacgccaccgcggccgagctg
cgggcggatctggaggccacgcgctccaagcagaagaccaaggacctctccaagcgcctc
aagatcgtggagcagatccgtggctccgagaacgatccgacgtggatggtcatggacgtg
gtgccggtgatcccgccggacctccgcccgctggttctgctggactcgggcaacttcgcc
accagcgacctgaacgacctgtaccgccgcatcatcaaccggaacaaccggctgaagaag
ctgatggacctgaacgcgcccgaggtcatcatccgcaacgagaagcggatgctgcagcag
tcggtggacgcgctcttcgacaacggacgctgccgccgcccggtgctcggcgcctccaac
cgcccgctcaagtcgctgaccgacatgatcaagggcaagcagggccgcttccgcgagaac
ctgctgggcaagcgcgtcgactactccgcgcggtcggtcatcgtcgtcgggcccgagctg
aagctgcaccagtgcgggctgcccaagaagatcgcgctggagctgttccagccgttcatc
atcgccaagctcaaggaccacggcctcgccgacacgatcaagagcgccaagaagatgctc
gagcggcgtgacccggaggtctgggacatcctcgaggaggtgatcgatcagcacccggtg
atgctcaaccgcgcccccaccctccaccgcatgggcatccaggccttcgagccggtgctg
gtcgagggcaacgcgatcaagatccacccgctggtctgctcgggcttcaacgcggacttc
gacggcgaccagatggcggtccacctgccgctgtccgtggaagcccaggcggaggccagc
gtgctgatgctctcgccgcacaacatcttctcccccgccaacggcagcccgatcatctcc
cccggccaggacatcgtctacggcgtcttctacatcacgaagatgcccgagacgctcgac
cccgagctggagaaggagctggtgaaccgcagcgccaacctcgcccccggcatggtcgag
aagatgaagtccgtcctggacttcaaggatcctgccgaggccctgctggcctacgacctc
aagaaggtcggcatccacacgcccatcgtggtccgcctccccggcgaccgctacggcggg
atcgtgaccgacgagcgggggccggtctcgccgctgcccgagacgcaccgcatcgtcacc
agcgtcggccggttgctcttcaacgacatcatcgcccagggcatgccctactacaacacg
gccctgggcaagaagggctgtagccgcgccgtcgccgacgcgtacagcttcaacggccga
cccgcgacgatcgccctgctggacgcgatgaaggaaatcggcttcaagcgtgcgaccacc
gccgggctttccttcggcatcaccgacctgcggatccccaagaagaagcacgagatcatc
gccgccacccaggcgaaggtcgatcgcgtcgagaaagcccacaacggcggcgccatcacg
gagcgcgagcgttacaaccagctgctggacctgtggacgcactgccgcgaggaggtgacc
aaggaggtcgtctacgagatgagccacgacgtccgcgacgccgagggccgcaagctcgag
ctcgaggatcccgagggccaccggtacatgaacgcggtctggatcgagatcgaatcgggc
gcccgcggctcgatcggccagctccagcagctcgccggcatgcgtggcctgatggccaag
ccttcgggtgagatcatcgagacgcccatcaaggcgaacgcgcgggaggggctcaacgtc
ctggagtacttcagcagcacccacggcgcccgcaaggggttggcggacaccgccctcaag
accgcggactcgggctacatgacccgcaagctgtgcgacgtggcgcagaacgtcttcacc
tcgctgcacgactgcggatcccgcaacggcatcaccaagcgggcgatcatgaagggcgac
gaggtggaggtctcgctcaaggagcggatcttcggccgcgtcgcccgcgagacgatcctg
gatccccaggacggctcggtgatcgtcagcgagaacgagatgatctcggccgaggcggcc
gaccggatcgacggcatcggcatcacctcggtgatggtccgcagcccgctgaccaccaac
gcgcagaccggctgctcggtgctcgactacggcatggacatgtccaccggcaagctcgcc
gagctgggcctggcgatcggcatcatcggcgcccagtcgatcggcgagcccggcacgcag
ctgacgatgcggaccttccacaccggcggcgtcgccaccacgacggcggccgacaccggc
ttcgtcgcctccggcgccggcaccgtgaggatcgtcgacgcctcggaggtgcccaccacc
gacgacgacggcaacgaggtgatggtcacgctgaagcgcaacggcgagatgatcctcgag
gacaagaagggcaacgagctcgagcggttcaagctcccctacggcggctacctgctcgtc
gagaacggccaggacgtcaagaagggcgcgagcctggtccgctgggacccgcaccgcgtg
ccgatcctcgccgagaagggcgggcgcgtgaagttcgaggacatcatcctcaacgagacc
gtgcggaccgagaagcagagccaggcgcaggcgtccaagggcggccgcaaggccggcggc
ggcggcgagcagatggtcgtgatcgagcacaagggcgtgcggcatccccgcatcaacgtg
gtcgacgagaagggcacgatcatggacttccactacctcccggcgaaggcccgcatcgag
gtgaccgacggccaggagatcgcggccggcaccatgctcgcccgccagcccaaggaagcc
tccggctcggccgacatcgtcggcggtctgccgcgggtgaccgagatcttcgaggcccgc
aagcccaaggattccggcgtcatgtcggacatcgagggcgaggtcgagatccagcaggac
aagcgcaagggcaagatgaccatcacggtccgctcggagtccggcctggaggtcgaccac
cacgtgccgcaggaccgccacctgctggtgcacacgggagaccgcgtgcaggctggcgat
ccggtcgtggagggcccgctggtcccgcaggacatcctgcgggtccgcggcgaggaagcg
ctcttcaactacctcatcgaggaggtccagaacgtgtaccgcgcccagggcgtgaccatc
aacgacaagcacatcgaggtcatcctggctcagatgctgcggaagatccgcgtggacaac
cccggcgacacggacctcctgcccaacgaggtggtcgacaagtaccgcttccgcaaggcc
cgcgaggccgtcgcgggggcgggcaaggtcaaggatcccggcgacagcaacctccgcgtg
aaccaggtgatcggccgcggcgagctcaaggacctgcggtcgaagctggaggccgagggc
aagacgcccccggtggtggtcaaggcccgcccggccaccggcaccacgctgctgctgggc
atcaccaaggcggcgctgcagtcggagagcttcctgtcgggagcgtccttccaggaaacc
acgaaggtgctcaccgaggcggcgctggccggcaagagcgacccgctgatgggcctcaag
gagaacgtgctgctgggtcacctgatcccggtgggcaccggcttcgaggactaccaggac
ctccgcatcaagaagctcgtccacccgccggtgcaggaagagctgacggtcgaggaggaa
accgccgcggcgatcgagctggcggtgaccgagggcgcgatcgctcccgatcagatcgag
accaccatcggcgacagcgaccgcttcaaggagctcatcggtgaggagcaggaagccgcc
gcttcctga
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integrated database retrieval system
