Paenalcaligenes hominis: PAEH1_05140
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Entry
PAEH1_05140 CDS
T04704
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
phn
Paenalcaligenes hominis
Pathway
phn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PAEH1_05140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phn03019
]
PAEH1_05140
03009 Ribosome biogenesis [BR:
phn03009
]
PAEH1_05140
Enzymes [BR:
phn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PAEH1_05140
Messenger RNA biogenesis [BR:
phn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PAEH1_05140
Ribosome biogenesis [BR:
phn03009
]
Prokaryotic type
rRNA processing factors
PAEH1_05140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_ribbon_InsA
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
AQS51113
UniProt:
A0A1U9JZ83
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All DBs
Position
1009061..1012243
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AA seq
1060 aa
AA seq
DB search
MKRMLFNATHQEELRVAIVDGQKLIDLDIESAGREQRKGNIYKGVITRVEPGLEACFVSY
GEDRHGFLPFKEVARTYFKEGVDVRNARIQDALVEGQELIIQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRVEGEERQELREAMDQLEVPHGMSIIARTAGIGRSVEELQ
WDLNYLLQLWSAIDGAAKENPAPVLIYLESSLVIRAIRDYFSLDIGEILIDTDDIHEQAT
AFMSLVMPDNVSRVKMYRDDIPLFSRFQIENQIETAYSRTVQLPSGGAVVIDHTEALVAI
DVNSARSTRGSDIEETALRTNLEAADEVARQLRLRDLGGLIVIDFIDMEDNKNQRAVEQR
LRDALHLDRARVQMGKISRFGLMELSRQRLRPALNEGSHITCPRCTGTGVIRDAESSALH
VLRLLQEEAMKEGTAAIHAQLPVDVATYLLNEKRSDVAKIESRLNVSLTLIPNKSLETPH
HIIERLRHDDPRLEELRSSYQQVKVEEESTLTPHRTHEIKPRPVALVKGVTPAQPAPMAA
VEKSNDPNLFTRLSAWIKTLFASPTPTEETAVKPKSDQQKRQRQTKNERRPNERQRQNRN
KSERRPDPTDPKAVVESGRPARNRRAAKPAPDSAITPDSSPEVEPSAQPTQGDSNNRRRR
RSPRNRRREQVTTDEQNVQQVAVVDESNEQVKAPAPVSKPPVVHDESQDEADQAKDTATE
QTASEHDDDQPTERRRNRRRRSRRSRRPSEETNVEVESTESTEENASQFVAHETPRFDAS
VLEEEQSSSPEAPTAPAAQAAALAEDTASVDATPTTPTEPIADASSASPVTTDETEPSPA
ASAIDSASAPAQKIDALSDELADAGLELVQTQSRTAPEPETPVQPLGRNPRSRWAEPVAD
EPLVMVETGSSPVQVTAEPTEAPHATETVSSSSVADVTSIDTATPAEDVTTTDVATTEEV
VTTEDTTAAQEPVEVAPIASSQETEAPVVASASQPSPDTPHFDPAELQAELDAVGLELVQ
TRADAVVDVTEPAVRLGRPRRPVAPVADVALEQVETDKKD
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttatttaatgcaacacaccaagaagaactacgtgttgctattgttgac
ggtcaaaaactgattgacctcgacatcgaatcggctggtcgagaacaacgcaaaggaaac
atttataaaggtgttatcactcgcgttgaacccggacttgaagcatgttttgtaagctat
ggcgaagaccgtcatggctttttgccttttaaagaagtcgcacgcacctacttcaaagaa
ggtgttgatgtacgcaatgcacgcattcaagatgcattggttgagggtcaagagctcatc
atccaagtcgaaaaagaagagcgtggcaataaaggcgctgccttaaccacctttatctcg
ctagcgggtcgttatttggtactcatgcctaacaatcctcgcggcggtggtgtatcgcgt
cgcgtcgaaggcgaagagcgtcaagagctacgcgaggccatggaccaactcgaagtgccc
cacggcatgagcatcatcgctcgcactgctggtattggccgtagtgtcgaagagctgcaa
tgggatctaaactacctgctgcagctttggtcagccattgatggcgccgccaaagaaaac
ccagcacctgttctcatttatctcgaatccagcctcgtcattcgtgctattcgtgattac
ttttcactcgatatcggtgaaatccttattgatacggacgacatccacgagcaagccacc
gcttttatgagcttggtcatgccggacaacgtcagccgcgtcaaaatgtaccgcgatgac
atccctttgttttcgcgttttcaaattgaaaaccaaattgaaacggcgtattcgcgtacg
gtacagctaccctcaggcggcgcagtggtcattgaccataccgaagccttggtcgccatt
gatgtgaactctgctcgctccacacgtggctctgatatcgaagaaacggcgctgcgcact
aacctcgaagccgcggatgaggtcgctcgtcaattacgcctacgggacttaggtggtctt
atcgtgatcgattttatcgacatggaagacaataaaaatcaacgtgccgtggaacaacgt
ctgcgtgatgcgcttcaccttgaccgcgctcgtgtacaaatgggcaaaatttcacggttt
ggccttatggagctctcacgtcaacgtctacgtccagcgttgaatgaaggttcacatatt
acttgcccgcgttgtactggtactggggtgattcgtgatgccgaatccagcgcactgcat
gtactacggttgctccaagaagaagccatgaaagaaggcacagcggcaattcatgcccaa
ttgccggtggatgtagcaacgtatttgctcaacgaaaaacgcagcgatgtggctaagatc
gagtcccgcttaaacgttagtctcacgcttattcctaataaatccctagagacaccgcat
catattattgagcgtttacgccatgatgacccacgcttagaggagctacggtcgagttac
caacaggtcaaagtcgaggaagaaagcactttgactccgcaccgcacccatgaaatcaaa
ccacgccctgtcgcgctggtcaaaggggtgacgcctgcgcagcctgcgcctatggcggcg
gttgaaaaaagcaatgaccccaatctgtttacgcgcttaagcgcctggattaaaacctta
tttgctagccccacccctactgaagaaaccgcagtaaaaccaaagtcagatcagcaaaaa
cgtcaacgccaaactaaaaacgagcgtcgtcctaacgagcgccagcgtcaaaaccgcaat
aaaagcgaacgtcgccctgacccgaccgaccctaaagccgttgtcgagtcaggacgccct
gcacgcaatcgacgcgctgccaagcccgcacccgatagcgcaataacgcccgacagcagc
cccgaggttgagccgtcagcacaacctacacaaggcgacagtaacaatcgtcgccgtcgc
cgtagcccacgcaatcgtcgccgcgaacaggtcactactgacgagcaaaatgtacaacag
gtcgctgtggtggacgaaagcaacgaacaggttaaggcccctgccccggtatctaaacct
cctgtggtgcacgacgagtctcaagatgaagccgaccaagcgaaagacaccgcaacagag
cagaccgcttctgagcacgatgacgatcagcctacagagcgtcgccgtaatcgtcgtcgc
cgcagccgtcgcagtcgccgtccaagcgaagaaaccaacgtagaagtcgagtccactgaa
agcacagaggaaaatgcgtctcaatttgtggctcatgaaaccccacgttttgatgcatct
gtgctagaagaagagcaatcatctagccccgaggcgcccactgccccagcagcacaagca
gccgctctggccgaggatacagcctctgtggacgccactccgactacacctaccgagccc
atcgctgatgctagctcagctagcccggttaccactgatgagactgagccgagcccagca
gcaagcgcgattgacagtgccagtgcacctgctcaaaaaatcgatgcattgagtgacgag
ctcgccgatgcagggttagagttagttcaaacgcaaagtcgcactgcgcccgagccagaa
acacccgttcaaccgcttggacgcaacccgcgttcccgttgggccgagccggtagctgac
gaaccgttagtgatggtagaaacagggagcagtcctgttcaagttaccgctgaacccacc
gaagcgccccacgcaacggaaaccgtttctagctcttctgtagcggatgtcacctcaatc
gacaccgcaacgcctgctgaggacgtaacaacgacggacgtagcaacgactgaggaggta
gtaactactgaggacacaacagccgctcaggagcctgttgaagtcgctcctattgcctct
tcacaggaaacagaagcgcctgttgtcgcgtcagccagtcaaccgtcacctgacacgccc
cattttgacccagctgaattacaagctgagcttgatgcggtcggccttgagcttgttcaa
actcgagccgatgcggtggttgacgttacagagccagccgtacgtctaggtcgccctcga
cgtcctgttgcccctgtagccgacgtagcgcttgagcaagtcgaaaccgacaagaaagac
taa
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