Paenalcaligenes hominis: PAEH1_08140
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Entry
PAEH1_08140 CDS
T04704
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
phn
Paenalcaligenes hominis
Pathway
phn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
phn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PAEH1_08140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phn03021
]
PAEH1_08140
03400 DNA repair and recombination proteins [BR:
phn03400
]
PAEH1_08140
Enzymes [BR:
phn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PAEH1_08140
Transcription machinery [BR:
phn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PAEH1_08140
DNA repair and recombination proteins [BR:
phn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PAEH1_08140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
AQS51536
UniProt:
A0A1U9K0H6
LinkDB
All DBs
Position
complement(1623118..1627326)
Genome browser
AA seq
1402 aa
AA seq
DB search
MKALLNLFKQVNQEEQFDAIRIGIASPEKIRSWSYGEVRKPETINYRTFKPERDGLFCAK
IFGPTKDYECLCGKYKRLKHRGVICEKCGVEVTVSKVRRERMAHIELACPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAWCVIDPGMTPLKRGQIMSDDDYLSKTEEYGDDFHALM
GAEAVRELLRTIDIDREVETLRAELKATGSDAKIKKISKRLKVLEGFQKSGIKPDWMILE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPDIILRNEKRMLQ
ESVDSLLDNGRRGKAMTGANKRQLKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHECGLPKLMALELFKPFIFNRLEMMGLATTIKAAKKLVENQEPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEA
RTLMLASNNVLFPANGEPSIVPSQDIVLGLYYATRARVNGKGEGMFFADVSEVQRAYDSH
EVELQTRITVRVDEYQKNEQGEWQGSKKRVETTVGRALLSEILPHGFPFELLNQALKKKE
ISRLINHSFRRCGLRATVIFADKLMQSGFSLATRGGISIGMNDMLVPAAKVEILDKAALE
VKEIDKQYSSGLVTAQERYNNVVDIWGKASDQVGKAMMEQLATEPVVDRHGNETRQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVITENDCGTTSGYTMKAVLDGGEVIEPLRDRIL
GRVAAIDIVNPDTQESVVVAGTLLDEDTVDLIDQLGIDEVKIRTPLTCETRHGLCAHCYG
RDLGRGSLVNRGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAATTSTVETKTAGQVGF
ALGLRYVTNAKGECIAISRSGEIIIYDDNRRERERHKIPYGATIAVNDGESVKAGQRVAS
WDPLTRPIVSEYTGTVRFENIEEGVTVASQVDEVTGLTTLVVITPKTRGGKTVTRPQIKL
LNEKGEEIKIAGTDHMVNISFPVGALITVRDGQQVSVGEILARIPQESQKTRDITGGLPR
VAELFEARSPKDAGLLAEVTGTVSFGKDTKGKQRLVITDFDGVSHEFLIPKEKQVLVHDG
QVVNKGETIVDGPPDPHDILRLKGIEQLASYVVNEVQDVYRLQGVKINDKHIEVIVRQML
RRVNITNAGDTDFITGEQVERSELLNENDRVEGQKGIPATYENVLLGITKASLSTDSFIS
AASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGMAYHQARHAKEEFEIAERR
AAREQENPFMETPSTEDSDTAE
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctctattaaatctctttaagcaagtcaatcaggaagagcaattcgatgccatt
cgcatcgggattgcttctcccgagaaaattcgttcttggtcttacggcgaagtccgtaag
ccagaaacgattaactaccgtacattcaaacccgagcgcgatggtttattctgcgccaag
atctttggtccaaccaaagactacgaatgtctgtgtggtaaatacaaacgcttaaagcat
cgcggtgtaatctgcgaaaaatgtggtgttgaggtcactgtctctaaagtgcgtcgtgaa
cgtatggcgcacatcgagcttgcatgtcctgttgcccatatttggtttttgaagagtctg
ccgtcccgtctcgggatggtgctagatatgacactgcgtgatatcgagcgcgtgttgtat
ttcgaagcatggtgtgtcattgatccaggcatgacgccactaaaacgtggccaaatcatg
tcagacgatgactacctgagcaaaacagaagaatacggtgacgacttccacgctttgatg
ggtgctgaagccgttcgtgaactgttgcgcaccattgatatcgaccgcgaggttgaaaca
ctgcgtgccgagctcaaagccacaggttctgatgccaagatcaaaaaaatctctaagcgc
ctaaaagtgctagagggcttccagaaatcagggattaagcctgactggatgatcctagag
gttttacccgtattacctcccgagttgcgccccttggtgccgctcgatggcggtcgcttt
gctacgtctgatctgaacgacctctatcgtcgtgtgattaaccgcaacaaccgtctaaag
cgtctactcgagctaaaagctcctgacattatcttgcgcaacgaaaagcgtatgttgcaa
gagtctgtcgactccttactcgataacggacgccgtggtaaagccatgactggcgctaac
aagcgccagcttaaatccttggccgatatgatcaagggtaaaagcggtcgtttccgtcaa
aacttgcttggtaagcgcgttgactactccggtcgttccgtgatcgtggtgggtccgcag
cttaaactacacgagtgtggtttacccaagctgatggcgttagagctgttcaaacccttt
attttcaatcgcttggaaatgatgggcttggctaccaccattaaggcggctaaaaagcta
gttgaaaaccaagaacccgtggtgtgggatatcttggaagaagtcattcgtgaacatcct
gtcatgcttaaccgtgcgcctaccttgcatcgtttaggtattcaggcgttcgagccagtg
ctgattgaaggtaaagccattcaattgcacccactggtttgtgctgcgtttaacgctgac
tttgatggtgaccaaatggcggtacacgtaccgttatcactcgaagcccagctcgaagca
cgcaccttgatgctagcttctaataacgtactgttcccagcgaacggcgagccttctatt
gttccttcacaggatatcgttttaggtttgtattacgctactcgtgctcgtgtaaacggc
aagggcgagggcatgttctttgcggatgtaagcgaagttcaacgtgcttacgacagtcac
gaagtggaattgcaaacacgtattacggtgcgtgtagatgaataccaaaaaaatgaacag
ggcgagtggcaaggctctaaaaaacgtgtagagaccacagtgggtcgtgcattgctttcc
gagattctgcctcatggtttcccgttcgagttgttaaaccaagcgctgaagaaaaaagaa
atttcacgcttaattaaccactctttccgtcgttgcggtctacgcgctacggttattttt
gcggataagctcatgcagtccggtttcagcctggcaacacgtggtggtatttcgattggc
atgaatgacatgctagtgccagccgctaaagttgaaattctcgacaaagccgcgcttgaa
gttaaagaaatcgacaagcagtactcctctggtttggttacggcccaagaacgctacaac
aacgtggtagacatttggggcaaggccagtgaccaggtgggtaaagccatgatggaacaa
ttggcaaccgaacccgtcgtcgaccgtcacggtaacgaaacacgccaagagtcctttaac
tccatctacatgatggcagactcaggtgctcgaggttctgctgcgcagattcgtcagttg
gcaggtatgcgtggtctgatggctaagccagatggctccattattgaaacacctattacc
gcgaacttccgtgaaggtctaaacgtacttcagtactttatttccactcacggtgctcgt
aaaggtctagctgatacggcgttgaagacagctaactccggttacttgactcgtcgtctg
gttgacgtaacacaagatttggtgattacggaaaacgattgtggtacgaccagtggttac
accatgaaagcagtgcttgatggtggtgaagtgattgagccattgcgtgaccgtattcta
ggtcgtgtagctgccattgatatcgtgaatcctgacacccaagaaagtgttgtggttgct
ggcacattgctggatgaagataccgttgacttaattgatcagctaggtattgacgaggtg
aaaatccgcactccattgacatgtgaaacacgtcatggtttgtgtgcacactgttatggt
cgcgatctaggtcgtggttctttagttaaccgaggtgaagccgttggtgtgattgctgcg
cagtccatcggtgagccaggtactcagttaacgatgcgtacgttccacattggtggtgcg
gcatctcgtgcggcaacaaccagtacggtagagaccaaaacagcgggtcaagtgggcttt
gcgcttggtttacgttatgtgaccaacgccaaaggcgagtgcatcgccatttctcgttct
ggcgaaattatcatttatgatgataaccgccgtgaacgtgagcgccacaagatcccatac
ggtgcgaccattgctgtgaatgatggcgagtccgtcaaagccggtcaacgtgtggcaagc
tgggatccattaactcgtccaatcgtgtcagagtacacaggtaccgttcgcttcgaaaac
atcgaagagggcgtcaccgtggccagccaagtggatgaggtaactgggttaaccactttg
gtggtgatcactccgaagacacgtggtggtaaaaccgtaacccgtcctcaaattaaactc
ttaaatgagaaaggcgaggaaatcaaaattgcgggtaccgatcacatggtaaatatctcg
ttcccagtgggtgcgttgattaccgtacgtgatggtcaacaggtatcggtgggtgaaatt
ctggcacgtattcctcaggaatctcagaaaacacgtgatattaccgggggtctaccacgc
gtggcagagctcttcgaagcacgttcacctaaagatgctggtttgctcgctgaagttacg
ggtactgtttcttttggcaaggacactaaaggtaaacaacgtctggtcattactgacttt
gacggggtaagccatgagttcctcattcctaaagaaaaacaagtgctggtgcatgacggt
caagttgtgaacaaaggcgaaaccatcgttgatggtccacccgatcctcacgatatcttg
cgtctgaaaggcatcgagcagttagctagctatgtggttaacgaagttcaagacgtttac
cgtctccaaggtgtgaagattaacgataagcatattgaagtgattgtgcgtcagatgctg
cgtcgtgtgaatatcactaatgcaggtgataccgacttcattaccggcgagcaggttgag
cgctccgaactcttaaatgagaacgatcgcgtagaaggccagaaagggattcccgccaca
tacgaaaacgtattgttgggtattactaaagcttctctatcgaccgactcctttatttcg
gcagcttctttccaagaaacaactcgtgttcttactgaagcggcgattatgggcaaacga
gatgagttacgtggtctgaaagaaaacgtaattgtgggtcgcttaattcctgctggtaca
gggatggcttaccaccaagctcgtcatgctaaagaagagtttgagattgcagaacgtcgt
gctgcacgtgaacaggaaaacccgttcatggagacaccgtccacagaggacagtgacaca
gcagaataa
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