Pyrococcus horikoshii: PH0043
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Entry
PH0043 CDS
T00014
Symbol
PH0043
Name
(GenBank) 200aa long hypothetical protein
KO
K07573
exosome complex component CSL4
Organism
pho
Pyrococcus horikoshii
Pathway
pho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PH0043 (PH0043)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pho03019
]
PH0043 (PH0043)
Messenger RNA biogenesis [BR:
pho03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
PH0043 (PH0043)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
PH0043 (PH0043)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
Auto_anti-p27
OB_RRP5_4th
A2L_zn_ribbon
FtrD-like
HVO_2753_ZBP
Trm112p
Zn_ribbon_IS1595
DZR
DZR_2
YnfU
Zn_ribbon_3
Zn_Tnp_IS91
Zn_Ribbon_TF
Prok-RING_1
HypA
Motif
Other DBs
NCBI-ProteinID:
BAA29111
UniProt:
O57820
LinkDB
All DBs
Position
complement(38340..38942)
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AA seq
200 aa
AA seq
DB search
MEENSERKKTIKDGDFVLPGDYLGVIEEYLPGDGVIAEDGNLYSTRAGWVRINKDKIEIS
LEPASKVPPVPKKGDIVYARVLEVKQQAVLLKMIKIEGQEGNREIATSKLAGIHISQVKD
GFVEDLRNEFKVGDIVRARVIADEKSPIQLTTKDPDLGVVYALCSKCRTPLVRKGNQLVC
PKCGNVETRKISNLYRKVKI
NT seq
603 nt
NT seq
+upstream
nt +downstream
nt
gtggaagaaaatagcgagagaaagaagactataaaagatggtgatttcgtgcttcccggg
gattacctgggggtaatagaggaataccttcctggggatggtgttatagctgaggatgga
aacttatactctaccagggccggatgggttaggataaataaggataaaattgagattagc
ctggagccggcatccaaagtacctccagtacctaagaagggggatatagtttatgcaaga
gtccttgaggttaagcaacaggccgttcttctgaaaatgataaagattgaggggcaggaa
ggtaatagggagatagcaacgtcaaaacttgctggaattcacatctcccaggttaaggat
gggttcgttgaggacttgaggaacgagtttaaggtaggagacatagttagggccagggtt
atagctgacgaaaaaagtccaatacagcttacaacaaaggatccagacctaggagttgtt
tatgctctctgttctaagtgcaggactcccctagtgaggaagggtaaccagctagtctgt
cccaagtgtggaaacgtagagactaggaaaatctcaaacctgtataggaaggtgaagata
tga
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