KEGG   Pyrococcus horikoshii: PH0043
Entry
PH0043            CDS       T00014                                 
Symbol
PH0043
Name
(GenBank) 200aa long hypothetical protein
  KO
K07573  exosome complex component CSL4
Organism
pho  Pyrococcus horikoshii
Pathway
pho03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pho00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PH0043 (PH0043)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pho03019]
    PH0043 (PH0043)
Messenger RNA biogenesis [BR:pho03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     PH0043 (PH0043)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     PH0043 (PH0043)
SSDB
Motif
Pfam: ECR1_N EXOSC1 Auto_anti-p27 OB_RRP5_4th A2L_zn_ribbon FtrD-like HVO_2753_ZBP Trm112p Zn_ribbon_IS1595 DZR DZR_2 YnfU Zn_ribbon_3 Zn_Tnp_IS91 Zn_Ribbon_TF Prok-RING_1 HypA
Other DBs
NCBI-ProteinID: BAA29111
UniProt: O57820
LinkDB
Position
complement(38340..38942)
AA seq 200 aa
MEENSERKKTIKDGDFVLPGDYLGVIEEYLPGDGVIAEDGNLYSTRAGWVRINKDKIEIS
LEPASKVPPVPKKGDIVYARVLEVKQQAVLLKMIKIEGQEGNREIATSKLAGIHISQVKD
GFVEDLRNEFKVGDIVRARVIADEKSPIQLTTKDPDLGVVYALCSKCRTPLVRKGNQLVC
PKCGNVETRKISNLYRKVKI
NT seq 603 nt   +upstreamnt  +downstreamnt
gtggaagaaaatagcgagagaaagaagactataaaagatggtgatttcgtgcttcccggg
gattacctgggggtaatagaggaataccttcctggggatggtgttatagctgaggatgga
aacttatactctaccagggccggatgggttaggataaataaggataaaattgagattagc
ctggagccggcatccaaagtacctccagtacctaagaagggggatatagtttatgcaaga
gtccttgaggttaagcaacaggccgttcttctgaaaatgataaagattgaggggcaggaa
ggtaatagggagatagcaacgtcaaaacttgctggaattcacatctcccaggttaaggat
gggttcgttgaggacttgaggaacgagtttaaggtaggagacatagttagggccagggtt
atagctgacgaaaaaagtccaatacagcttacaacaaaggatccagacctaggagttgtt
tatgctctctgttctaagtgcaggactcccctagtgaggaagggtaaccagctagtctgt
cccaagtgtggaaacgtagagactaggaaaatctcaaacctgtataggaaggtgaagata
tga

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