Pyrococcus horikoshii: PH0059
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Entry
PH0059 CDS
T00014
Symbol
PH0059
Name
(GenBank) 478aa long hypothetical protein
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pho
Pyrococcus horikoshii
Pathway
pho03410
Base excision repair
pho03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PH0059 (PH0059)
03430 Mismatch repair
PH0059 (PH0059)
03440 Homologous recombination
PH0059 (PH0059)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pho03400
]
PH0059 (PH0059)
DNA repair and recombination proteins [BR:
pho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
PH0059 (PH0059)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PH0059 (PH0059)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PH0059 (PH0059)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH_CID
DHHA1
DHH
Acid_phosphat_B
Urocanase_C
Motif
Other DBs
NCBI-ProteinID:
BAA29127
UniProt:
O57804
LinkDB
All DBs
Position
50891..52327
Genome browser
AA seq
478 aa
AA seq
DB search
MFLMDKEGFLEKIREAVDLVKFHIELGHTIRIISHRDADGITSAAILAKALAREGAKFHI
SIVKQVSEELVRQLKDEEYKIIIFSDLGSGSLSLIGEHLKDKSVVILDHHPPEPVETHEK
HILANPVQFGANSVRDLSGSGVSYFFARELNEMNKDLAYIAIVGAVGDMQENDGVFHGMN
LDIIEDGKSLGILEVRKELRLFGRETRPLYQMLAYATNPEIPEITGDERKAIEWLRNKGF
DPDKKYWELSDEDRKKLHDYLVIHMIKHGAGKEEIDKLIGDVVISPLYPQGDPRHEAREF
ATLLNATGRLNLGNLGVAVCLGDEEAFRKAMKMVEEYKKEQIEARKWLLQNWEKEVWEGE
NVYILYVGKNIRDTLVGIAASMAINAGLANPEKPVIVFADTDEDPNLIKGSARTTEKALE
RGYHLGEALRKAAEIIGGEGGGHAIAAGIRVPKARFAEFRKLIDKLLGEQVKKNEDQG
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
gtgttcttgatggataaggaggggtttttggagaagataagagaagcagttgatttagta
aaatttcacatcgagttagggcacaccataaggataatctcccatagggatgcagatgga
ataacgtcagcggccatactggcaaaggccttagcgagggaaggtgctaagttccacata
agcatagttaagcaggtaagtgaagagctcgttagacagcttaaggatgaagagtacaag
attataatattctccgacctgggaagcggatcccttagtctaataggagagcatctcaag
gataagagcgttgtgatccttgatcaccaccccccggaacccgttgaaacccacgaaaag
cacattcttgcaaatcccgtccagttcggtgcgaatagtgttagagacctcagcggttcc
ggagtttcatacttcttcgccagggaacttaatgaaatgaacaaagatctagcctacata
gcaatagtgggagctgtcggcgatatgcaggagaacgatggagtattccatgggatgaac
ctcgacataatagaagatggtaaatccctggggatacttgaggtaaggaaagaacttaga
ttatttggaagggaaactagaccattgtaccaaatgctggcttacgcaacgaatcccgag
atcccagagataactggggatgaaagaaaggccattgaatggcttagaaacaaaggtttt
gatccagacaagaaatattgggagctcagcgatgaggacaggaaaaagcttcacgattac
ttggttatccatatgatcaagcacggggccggaaaagaagaaatagataaacttattgga
gacgttgtcataagccccctctatccccagggagatccaaggcatgaagcaagggagttc
gcaacactcctaaacgcaaccggcagacttaaccttggaaaccttggagtagcggtatgc
ttaggggatgaagaggcttttagaaaagccatgaagatggtggaggagtacaagaaggaa
caaatagaggcgagaaagtggctactccaaaactgggaaaaggaggtttgggagggagaa
aatgtctacatcttgtacgtgggcaagaacattagggataccctcgtagggatagctgca
agcatggccataaatgcgggacttgcaaaccctgagaagcccgtaatagtctttgctgac
acggacgaagatcctaacctgatcaagggatccgccaggacaacagagaaagccctggaa
aggggttatcacttaggagaggccttaaggaaagctgctgagataatcggaggagaaggt
ggagggcacgctatagctgcaggaattagggtacccaaagctagattcgccgaattcaga
aagcttatagacaagctgcttggagaacaggtgaaaaagaatgaagatcaaggttga
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