Pyrococcus horikoshii: PH1549
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Entry
PH1549 CDS
T00014
Symbol
PH1549
Name
(GenBank) 249aa long hypothetical protein
KO
K11600
exosome complex component RRP41
Organism
pho
Pyrococcus horikoshii
Pathway
pho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PH1549 (PH1549)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pho03019
]
PH1549 (PH1549)
Messenger RNA biogenesis [BR:
pho03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
PH1549 (PH1549)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
PH1549 (PH1549)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Pinin_SDK_N
Motif
Other DBs
NCBI-ProteinID:
BAA30661
UniProt:
O59223
LinkDB
All DBs
Position
complement(1381549..1382298)
Genome browser
AA seq
249 aa
AA seq
DB search
MMEKPEGLKLIDENGRRIDGRKKYELRPIKMKVGVLKNANGSAYIEWGRNKIIAAVYGPR
ELHSKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPR
TSIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEED
NYGEADVPVAIMPLKNDITLLQMDGYLTKEEFIEAVRLAIKGAKAVYQKQREALKEKYLK
IAQEVEESE
NT seq
750 nt
NT seq
+upstream
nt +downstream
nt
atgatggagaaaccagaaggacttaaattgattgatgaaaatggtagaaggatagatggg
agaaagaagtatgagcttaggccaatcaagatgaaggttggagttttgaagaatgcaaat
ggttccgcatatatagagtgggggaggaacaagattatcgccgctgtatatggtccgagg
gaattgcactcaaaacacttacaaagacctgatagggctattcttagagtcagatataat
atggccccttttagcgtggaggagaggaagaaacctggccctgataggagaagcattgag
ataagtaaggtgattaagggggctttagagccagccttgatcttggagatgtttcccagg
acgagtatagatgtttttattgaagtcctccaagcagatgcaggaactagggttgcagga
ataacggccgcttctctagctttggctgatgcgggtattcctatgagagatttagttgca
gcgtgtgcggccggtaaaatagaaggggagatcgttctagatcttaataaggaggaggat
aactatggagaagcagatgtaccagtcgctataatgccccttaaaaatgacataaccctt
cttcagatggatggctacttaaccaaggaagagtttattgaagctgtaaggttggcaata
aagggtgcaaaggccgtttatcaaaagcagagggaagccctcaaggaaaagtaccttaag
atagcccaggaggttgaggaaagtgagtga
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