Pyrococcus horikoshii: PH1602
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Entry
PH1602 CDS
T00014
Symbol
PH1602
Name
(GenBank) 871aa long hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pho
Pyrococcus horikoshii
Brite
KEGG Orthology (KO) [BR:
pho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pho03016
]
PH1602 (PH1602)
Enzymes [BR:
pho01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
PH1602 (PH1602)
Transfer RNA biogenesis [BR:
pho03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
PH1602 (PH1602)
Prokaryotic type
tRNA splicing ligases
PH1602 (PH1602)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
LAGLIDADG_3
Intein_splicing
LAGLIDADG_WhiA
Motif
Other DBs
NCBI-ProteinID:
BAA30714
UniProt:
O59245
Structure
PDB
PDBj
LinkDB
All DBs
Position
complement(1419970..1422585)
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AA seq
871 aa
AA seq
DB search
MVVPLKRIDKIRWEIPKFDKRMRVPGRVYADEVLLEKMKNDRTLEQATNVAMLPGIYKYS
IVMPDGHQGYGFPIGGVAAFDVKEGVISPGGIGYDINCLAPGTRVLTEHGYWLKIEEMPE
KFKLQRLRVYNIEEGHNDFSKVVFVAEREVGSEEKAIRIVTESGKVIEGSEDHPVLTPEG
YVYLRNVKEGDYILVYPFEGVPYEEKKGVILDESAFEGEDPQVVKFLRERNLIPLQWKDP
KVGILARILGFALANGYISENDNLTFHGKEEVLREVRKDLEELGIEAIVAEEDKLKVTSR
EFAFLLEKLGMAHDSIPEWIIEGPLWIKRNFLAGLFGANGSIVEFKGDVPLPITLTHSRE
LLNDVSRILEGFKVRAKIKMGKNGSYQLVIEDEDSIRNFLGRINYEYDPEKKARGLIAYA
YLKFKELMKGNLMTFEEFARDRGYEGGFVAEKVIEVKSVKPEYDKFYDIGVYHSAHNFIA
NGIVVHNCGVRLIRTNLTEKEVRPRIKQLVDTLFKNVPSGVGSQGRIKLHWTQIDDVLVD
GAKWAVDNGYGWERDLERLEEGGRMEGADPEAVSQRAKQRGAPQLGSLGSGNHFLEVQVV
DKIFDPEVAKAYGLFEGQVVVMVHTGSRGLGHQVASDYLRIMERAIRKYRIPWPDRELVS
VPFQSEEGQRYFSAMKAAANFAWANRQMITHWVRESFQEVFKQDPEGDLGMDIVYDVAHN
IGKVEEHEVDGKRVKVIVHRKGATRAFPPGHEAVPRLYRDVGQPVLIPGSMGTASYILAG
TEGAMKETFGSTCHGAGRVLSRKAATRQYRGDRIRQELLNRGIYVRAASMRVVAEEAPGA
YKNVDNVVKVVSEAGIAKLVARMRPIGVAKG
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atggtggttcccctaaagaggatagataagattcggtgggagattccaaagtttgataag
agaatgagagtcccaggaagggtgtatgctgatgaagtacttcttgaaaaaatgaaaaac
gatagaacccttgagcaagctactaacgttgcaatgcttccggggatatataagtattcc
atcgtaatgcctgacggtcatcagggttatggatttccaataggcggtgtagcggccttt
gatgtcaaagagggagttatcagcccaggaggaattggttacgacattaactgtcttgct
ccaggtactagagtcttaacagagcatggttactggttaaaaatcgaagagatgcctgag
aagttcaaacttcagagattgagggtttataatattgaggaaggacataacgacttttca
aaggtagtttttgtagctgagagggaggttgggagtgaggagaaagctattagaatagtt
accgaaagcgggaaagttatagagggaagcgaggatcatcccgttttaaccccagagggt
tatgtttatctcagaaatgttaaagagggagactatattctggtgtatccctttgagggt
gttccatacgaggaaaagaaaggtgttattctagatgaaagtgcttttgaaggtgaggat
cctcaggttgtgaagtttcttagagagaggaatcttattccgcttcagtggaaagatcca
aaggttggaatccttgcaaggatcctcgggtttgctttggccaatggatacattagtgaa
aatgataacttaacattccatggtaaggaagaagtacttagagaggttaggaaggatctc
gaagagttaggtattgaggctatagtagctgaggaggataaactgaaagttacgtcgaga
gaatttgctttcctacttgagaaacttgggatggctcatgatagtatcccagaatggata
attgaaggtcctctctggatcaaaaggaactttttagctggactttttggtgcgaatgga
agcatagtcgaatttaaaggtgatgtcccgcttccaataaccttgacgcactctagggaa
ttattaaatgatgtatcaaggatccttgagggcttcaaagtaagggcaaaaataaagatg
gggaaaaatggaagctatcaactggtcattgaggatgaggacagcataaggaacttcctg
ggtagaattaactatgagtacgatcctgagaaaaaggccaggggacttatcgcttacgct
taccttaagttcaaggagctcatgaaagggaatctcatgacatttgaagaatttgcaagg
gatagaggatacgaaggtggattcgttgcagaaaaggtcattgaggttaaaagcgttaaa
cctgaatacgataagttctacgacatcggtgtttaccatagtgcccataatttcatagcc
aacggtatcgtcgttcataattgtggtgtgaggttaataagaactaacctcaccgagaag
gaagtaaggcccaggataaagcaactcgttgatacactcttcaagaatgttccatccggt
gtgggtagtcagggaaggataaaactccattggactcaaattgatgacgtccttgtagat
ggagcaaaatgggccgttgataacggctatggatgggagagagacctagagaggcttgaa
gaagggggaaggatggaaggtgctgatccagaggccgtaagccaaagagcgaagcagaga
ggtgctcctcaacttggttctctaggttccggaaatcacttccttgaggttcaagtagtt
gataagatatttgatcctgaagtggctaaagcttacgggctcttcgaaggtcaagttgtc
gtcatggttcacacgggatctagagggcttggacatcaagttgcaagtgattaccttagg
ataatggagagggccataagaaagtataggataccttggccagatagggagttggtaagc
gttcccttccagagtgaagaggggcagaggtacttcagtgctatgaaagcagctgctaac
tttgcttgggcaaataggcagatgataacgcattgggtcagggaaagcttccaagaagtg
tttaaacaggatcccgagggagacttgggcatggatatagtttacgatgttgctcacaat
attggtaaggttgaagaacacgaagtggatgggaagagggttaaagttatagtccacagg
aaaggtgctacgagggcatttccaccggggcatgaagcggttccaaggctttatagagat
gttgggcaaccggttcttatcccaggaagcatgggcactgcaagttatatactagcggga
acagaaggggccatgaaagaaacttttggaagcacttgtcatggagctggaagagtattg
agcaggaaagcggcaacgagacagtataggggagataggattagacaggaacttcttaac
aggggaatctatgttagagcggcttcaatgagggttgttgctgaggaagctccaggggct
tataagaatgttgataatgtagttaaggtagtcagtgaagctggaatagctaagctagtt
gctagaatgaggcctataggtgtagcgaagggttga
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