Paracoccus homiensis: ACLISE_01565
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Entry
ACLISE_01565 CDS
T11345
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
phoi Paracoccus homiensis
Pathway
phoi03030
DNA replication
phoi03430
Mismatch repair
phoi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
phoi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACLISE_01565 (dnaE)
03430 Mismatch repair
ACLISE_01565 (dnaE)
03440 Homologous recombination
ACLISE_01565 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phoi03032
]
ACLISE_01565 (dnaE)
03400 DNA repair and recombination proteins [BR:
phoi03400
]
ACLISE_01565 (dnaE)
Enzymes [BR:
phoi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ACLISE_01565 (dnaE)
DNA replication proteins [BR:
phoi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ACLISE_01565 (dnaE)
DNA repair and recombination proteins [BR:
phoi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ACLISE_01565 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
DUF655
Motif
Other DBs
NCBI-ProteinID:
XMR59142
LinkDB
All DBs
Position
305233..308703
Genome browser
AA seq
1156 aa
AA seq
DB search
MATKSPRFIHLRTHSEHSLLEGAIPVGKLPALAADAGMPAVALTDTNAMFAALEFSVKAM
DKGVQPIIGCQVTLQADVTGPIVLLAQDQQGWLNLMSLSTCLYMRDGPDLPHVTLDELCE
RSEGLICLTGGAQGPLGQLIAQGQKDRAAALADRLAKAFPTRLYVELQRHPGENGKLPEP
EALSEAGLIELAYAQELPLVATNDVYFPKPDLYEAHDALICIAEKAYVDQSQPRRRLTPQ
HYFKSPEEMAVLFADLPEALDNTVEIARRCAFAVAKHAPILPKFADDEVAELRRQANEGL
QARLKVIPHAVSVEDYQKRLDFELGIIEQMGFPGYFLIVADFIGWAKEHDIPVGPGRGSG
AGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDIDFCMDRREEVIRYVQEKYGKD
KVGQIITFGALLSKAAVRDVGRVLQLPFGQVDRLSKMIPVEGVKPVSITKARADEPRLRE
AAKEEVVGRLLDYAEKIEGLYRNASTHAAGVVIGDRPLDRLVPLYRDPASDMPATQFNMK
WVEQAGLVKFDFLGLKTLTVIQNAVDLINGGGRPLHVAADGRELYQPPEGAVNQINAIPL
DDKASYDLFASARTVAVFQVESSGMMDALRRMRPTCIEDIVALVALYRPGPMENIPTYCD
VKNGARELESIHPSIDHILAETQGIIVYQEQVMQIAQVMAGYSLGGADLLRRAMGKKIAA
EMAKERPKFIKGSVENGVSEKKAGEVFDLLEKFANYGFNKSHAAAYAVVSYQTAWLKANH
PVEFMAAVMNCDIHLTDKLAVYKRECDRMGIEIVPPCVNRSAPSFTVKDGRIHYALGALK
GVGLEAMRLIHEARGDQPFRDINDFARRVDMKRVGKRPLEMLARAGAFDLLDDNRARVLK
SLDGLVAWSAAVQEQAASAQTSLFGGGEDLPPPRPALAQVWLPAEKLGEEHKAVGFYLSG
HPLDDYLPALKRKKVQTLAEISADAAGGPLVTSIAGTVAARMERKSAKGTQYAFVSLSDP
TGLYEVTVFSDLLNAARDRLEPGENVVLQVKVEPSGDQVKMLANSVARLDDAVADAGAGC
LAVEMQGADTIPRLAEVLGRIQTEITVSSRSRGPVLLRIREGDELIEIEVANDAPLTTPA
RQALRAVPGVLEVVEE
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgaaatccccccgattcatccatctgcgcacacattccgagcattccttgctg
gaaggtgcgattcccgtaggcaaattgccggcgcttgccgccgatgcgggcatgcccgcg
gtcgcgctgaccgataccaacgccatgttcgcggcgctggaattcagcgtgaaggcgatg
gacaagggggtgcagccgatcatcggctgtcaggtcaccctgcaggccgacgtgaccggc
cccatcgtcctgctggcgcaggatcagcagggctggctgaacctgatgtcgctgtcgacc
tgcctttacatgcgcgacgggcccgatctgccgcatgtcaccctggatgagctgtgcgaa
aggtccgaggggctgatctgtctgacgggcggtgcgcaggggccgttgggccagttgatc
gcgcaggggcagaaggacagggctgcggcgctggccgatcggcttgccaaggcgttcccg
acgcggctttacgtcgaattgcagcgccatccgggcgaaaacggcaagctgcccgaaccc
gaggcgctgtccgaggccgggttgatcgaactggcctatgcgcaggaattgccgttggtc
gcgaccaatgatgtctatttccccaagccggatctttacgaggcgcatgatgcgctgatc
tgtattgccgaaaaggcctatgtcgatcagtcgcagccccgccgccgtctgaccccgcag
cactacttcaaatcgcccgaagaaatggccgtgctgttcgcggacctgcccgaggcgctg
gacaacaccgtcgagatcgcccggcgctgtgcctttgcagttgccaagcacgcgccgatc
ctgcccaaattcgccgatgacgaggtggccgagctgcgccgtcaggccaatgaggggttg
caggcccgtctgaaggtgatcccccacgcggtcagcgtcgaggattatcagaagcggctg
gatttcgaactgggcatcatcgaacagatgggctttcccggctatttcctgatcgtggcc
gatttcatcggctgggccaaggaacatgacatcccggtcgggccggggcgggggtcgggc
gcgggcagccttgtggcctatgcgctgaccatcaccgatctggatccgctgcgctacagc
ctgctgttcgaacgctttctgaaccccgaacgcgtcagcatgccggatttcgacatcgac
ttctgcatggatcgccgcgaagaggtgatccgatacgttcaggaaaaatacggcaaggac
aaggtcggccagatcatcaccttcggcgcgctgctgtccaaggccgcggtgcgcgatgtg
ggacgggtgctgcaactgccattcgggcaggtggaccggctgtccaagatgatcccggtc
gagggtgtgaaacccgtcagcatcaccaaggcccgcgccgatgaaccccgcctgcgcgag
gccgccaaggaagaggtcgtcggccgcctgctggattacgccgaaaagatcgaggggctg
tatcgcaacgcctccacccatgcggccggggtggtgatcggggaccgcccgctggaccgg
ctggtgccgctgtatcgcgatccggcatccgacatgcccgcgacccagttcaacatgaaa
tgggtcgaacaggccggtctggtcaaattcgactttctgggcctcaagacgctgaccgtc
atccagaacgccgtcgatctgatcaatggcggggggcggcccctgcatgtcgccgccgac
gggcgcgaactgtaccagccgcccgagggtgcggtgaaccagatcaacgcgatcccgctg
gacgacaaggccagctatgacctgttcgccagcgcccggacggtcgcggtgtttcaggtg
gaatccagcggcatgatggacgcgctgcggcgcatgcgcccgacctgcattgaggatatc
gtggcactggtcgcgctgtaccgtcccggcccgatggagaatattccgacctattgcgac
gtgaagaacggcgcgcgcgaactggaatcgatccaccccagcatcgaccatatccttgcc
gaaacgcagggcatcatcgtctatcaggaacaggtgatgcagatcgcgcaggtcatggcg
ggctacagccttggcggcgccgacctgctgcgccgcgcgatgggcaagaagatcgccgcc
gagatggccaaagagcgcccgaaattcatcaagggcagcgtcgagaacggcgtgtccgaa
aagaaggccggcgaggtctttgacctgctggagaaattcgccaattacggcttcaacaag
tcccacgctgccgcctatgccgtggtcagctatcagacggcatggctgaaggcgaaccac
ccggtcgaattcatggccgcggtgatgaattgcgatatccatctgaccgacaagctggcc
gtctataaacgcgaatgcgaccgcatggggatcgagatcgtgcccccctgcgtcaaccgc
tcggcccccagtttcacggtgaaggatggccgcatccattacgcgcttggggcgctgaag
ggcgtcgggctagaggcgatgcgcctgatccacgaggcgcgcggcgatcagcccttccgc
gatatcaacgatttcgcccgccgcgtcgacatgaagcgcgtcggcaagcggcctctggaa
atgctggcgcgtgccggggcgttcgacctcctggacgacaaccgcgctagggtgctgaaa
tcgctggacgggctggtggcgtggtcggctgcggtgcaggaacaggccgcctcggcccag
acatcgctgtttggcgggggcgaggatctgccaccgccgcgccccgcgctggcgcaggtc
tggctgcccgccgaaaagctgggcgaggaacacaaggccgtcggcttctacctgtcgggt
catccgctggacgattacctgcccgcgctgaagcgcaagaaggtgcagacgctggccgaa
atcagcgccgatgcggcgggtgggccgctggtcacctcgatcgcggggacggtggcggcg
cggatggaacggaaatcggccaagggtacgcaatacgcctttgtcagcctgtccgatccg
accggcctttacgaggtgaccgtgttcagcgacctgctgaacgcggcccgcgaccggctg
gaaccgggcgagaatgtcgtgttgcaggtcaaggtcgaaccttcgggcgatcaggtcaag
atgctggccaattccgtcgcgcggctggacgatgccgtcgccgatgcaggcgcgggctgt
ctggccgtcgagatgcagggcgccgacacgatcccgcgcctggccgaggttctgggccgc
atccagaccgagatcaccgtctcatcgcggtcgcgcgggccggtcctgctgcgcattcgc
gagggcgacgaactgatcgagatcgaggtcgccaatgacgcgcccctgaccacgcccgcc
cgtcaggcgctgcgtgcggtgcccggcgtgttggaggtggtcgaggaatag
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