Paracoccus homiensis: ACLISE_03345
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Entry
ACLISE_03345 CDS
T11345
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
phoi Paracoccus homiensis
Pathway
phoi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
phoi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACLISE_03345 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phoi03021
]
ACLISE_03345 (rpoC)
03400 DNA repair and recombination proteins [BR:
phoi03400
]
ACLISE_03345 (rpoC)
Enzymes [BR:
phoi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACLISE_03345 (rpoC)
Transcription machinery [BR:
phoi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACLISE_03345 (rpoC)
DNA repair and recombination proteins [BR:
phoi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACLISE_03345 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
BSH_YknX
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
XMR59458
LinkDB
All DBs
Position
648232..652476
Genome browser
AA seq
1414 aa
AA seq
DB search
MNQELATNPLNPLTPPRQFDEIKISLASPEEILAWSFGEVKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGLVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLK
SLPSRIGLMLDMTLRDLERILYFENYVVIEPGLTDLTYGQLMTEEEYLDAQDNFGADAFT
ADIGAEAIRAMLANIDLAATAEQLREDLKEATGELKPKKIIKRLKIVESFLESGNRPEWM
IMTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGNNRRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMVLGLYYTSMMREGMKGEGMAFSNIEEVEHAL
AAGEVHLHAKIMARIRQIDDDGQEVVRRFETTPGRVRLGALLPMNAKAPFELVNRLLRKK
DIQNVIDTVYRYCGQKESVIFCDQIMGLGFREAFRAGISFGKNDMVVPDNKWTIVEEVQE
QVKEFEQQYLDGLITQGEKYNKVVDAWSKCNDRVTEAMMSTISATKFDESGAEQEPNSVY
MMAHSGARGSTNQMKQLGGMRGLMAKPNGEIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIIREHDCGTENSITASAAVNDGEVIAPLSERVLGRT
AAEDVLVPGSDEIIIRAGEVVDERRADEIEKAGVQSMRIRSALTCESEDGICALCYGRDL
ARGTLVNIGEAVGIIAAQSIGEPGTQLTMRTFHIGGIAQGGQQSFQAASHEGTIQFRNES
ILENASGEQVVMSRNMQLIVLDDQGQERASHKLFYGSKLFVKEGDRVIRGAKLFEWDPYT
LPIIAEKAGTAKFVDLLGGISVRDETDDATGMTQKIVTDWRSAPKGNDLKPEIIIMDANG
EPVRNDQGNPVSYPMSVDAILSVEEGQEIKAGDVVARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGYVRFGKDYKNKRRIAIEPSEEGGSPVEYMVPKGKHIPVQEGDFVQ
KGDYIMDGNPAPHDILRIMGIEALADYLIDEVQDVYRLQGVKINDKHIEVIVRQMLQKIE
ILDSGDTTLLKGEHVERDEFQEENAKIEAKGGRPATGEPVLLGITKASLQTRSFISAASF
QETTRVLTEASVQGKRDKLVGLKENVIVGRLIPAGTGGATTRVRRIAAERDNEVIQARKA
EAETAAALAAPDMTDSAPATDSVVIDMPEGNGDA
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaacttgccacaaatcccctgaacccgctgactcctccgcggcagttcgat
gaaatcaagatctcgctggcctcgcccgaagaaattctggcctggtccttcggcgaggtg
aagaagcccgaaaccatcaactaccgcacgttcaagcccgagcgtgacggtctgttctgc
gcgcgcatctttggtccgatcaaggactacgaatgcctgtgcggcaaatacaagcgcatg
aagtatcgcggcctcgtctgcgagaaatgcggcgtggaagtcacgctgcagaaggtccgc
cgcgagcgcatgggccatatcgagctggccgcgcccgtcgcgcatatctggttcctcaag
tcgctgccctcgcgcatcggcctgatgctggacatgaccctgcgcgacctggaacgcatc
ctgtacttcgagaactacgtggtgatcgaacccggtctgacggacctgacctatggtcag
ctgatgaccgaggaagaatatctggacgcgcaggacaacttcggtgccgacgccttcacc
gccgatatcggcgccgaggcgatccgcgccatgctggccaatatcgatctggccgcaact
gccgagcagctgcgcgaggatctgaaggaagccaccggtgaactgaagccgaagaagatc
atcaagcgtctgaagatcgtcgaaagcttcctggaatcgggtaaccgtccggaatggatg
atcatgaccgtgatcccggtcattccgccggaactgcgtccgctggttccgctggatggc
ggccgcttcgcgacctcggatctgaacgatctgtatcgccgcgtgatcaaccggaacaac
cgtctgaagcgcctgatcgagctgcgcgcgcccgacatcatcgtccgcaacgaaaagcgg
atgctgcaggaatcggtcgatgcgctgttcgacaacggccgtcgtggccgtgtcatcacc
gggaacaaccgtcgcccgctgaagtcgctgtcggacatgctgaagggcaagcagggccgc
ttccgtcagaaccttcttggcaagcgcgtcgacttttcgggtcgttcggtcatcgtgacc
ggccccgaactgaagctgcatcagtgcggtctgccgaagaagatggcgctcgaactgttc
aagccgttcatctattcgcgtcttgaggcgaagggcctgtcctcgaccgtcaagcaggcc
aagaagctggtcgaaaaggaacgccccgaggtctgggacatcctggacgaggtgatccgc
gagcatccggtcctgctgaaccgtgcgccgacgctgcaccgtctgggcattcaggcgttc
gaaccgacgctgatcgaaggtaaggcgatccagctgcacccgctggtctgttcggccttc
aacgccgactttgacggcgaccagatggcagttcacgttccgctgagccttgaggcgcag
ctggaagcccgcgttctgatgatgtcgacgaacaacgttctgtcgcccgccaacggcgcg
ccgatcatcgttccgtcgcaggacatggttctgggcctttattacacctcgatgatgcgc
gaggggatgaagggcgagggcatggccttctcgaatatcgaggaagtcgaacacgcgctt
gccgcaggcgaggtgcatctgcacgccaagatcatggcccgcatccgtcagatcgacgat
gacggtcaggaagtcgtgcgtcgctttgaaaccacgccgggccgtgtccgtctgggcgcg
ctgctgccgatgaacgccaaggctccgttcgagctggtgaaccgtctgctgcggaagaag
gacatccagaacgtcatcgacaccgtctaccgttattgcggccagaaagagtcggttatc
ttctgtgaccagatcatgggtctgggcttccgcgaagccttccgtgccggcatcagcttc
ggcaagaacgacatggtggttcccgacaacaagtggaccatcgtcgaggaagtccaggag
caggtgaaggagttcgagcagcagtatctcgacggtctgatcacccagggcgagaagtac
aacaaggtcgtggacgcctggtcgaaatgcaacgaccgcgtgaccgaggccatgatgtcg
accatctcggccaccaagttcgacgaatccggcgccgagcaggaaccgaacagcgtctac
atgatggcgcattcgggtgctcgtggttcgaccaaccagatgaagcagctgggcgggatg
cgcggcctgatggccaagccgaacggcgagatcatcgagacgccgatcatctcgaacttc
aaggaaggtctgaccgttcttgaatacttcaactcgacccacggcgcgcggaagggtctg
tcggacacggcactgaagacggcgaactcgggttacctgacccgccgtctggtcgacgtg
gctcaggactgcatcatccgcgaacatgattgcggcaccgagaactcgatcaccgcttcg
gcggccgtcaacgacggcgaggtcatcgcgcccctgtccgagcgtgttctgggccgtacc
gcggccgaggacgtgctggttccgggttcggacgagatcatcatccgtgcgggcgaggtc
gtcgacgaacgtcgcgccgacgagatcgagaaggcgggcgtgcagtccatgcgcatccgc
tcggccctgacctgcgaatccgaggatggcatctgtgcgctgtgctatggtcgcgacttg
gcacgcggcacgctggtcaacatcggcgaggctgtcggcatcatcgccgcgcagtcgatc
ggtgaacccggcacgcagctgacgatgcggaccttccacatcggcggcatcgcgcagggt
ggccagcagtccttccaggccgcctcgcacgagggcacgatccagttccgcaacgagagc
atcctggaaaacgccagtggcgagcaggtcgtgatgtcgcgcaacatgcagctgatcgtc
ctggacgaccaggggcaggaacgcgccagccacaagctgttctacggcagcaagctgttc
gtgaaggaaggcgaccgtgtcatccgtggcgccaagctgttcgaatgggatccctatacc
ctgccgatcatcgccgagaaggccggtaccgccaagttcgtcgacctcctgggcggcatc
tcggtgcgtgacgagaccgacgacgcgacgggcatgacccagaagatcgtgaccgactgg
cgttcggcgccgaaaggcaacgacctcaagcccgagatcatcatcatggacgccaacggc
gaaccggtgcgcaacgaccagggcaacccggtcagctatccgatgtcggtggacgccatt
ctctcggtcgaggaaggccaggagatcaaggcaggcgacgtggttgcccgtattccgcgc
gaaggcgccaagaccaaggacatcaccgggggtcttccccgcgtggcggaactgttcgag
gcccgtcgcccgaaggatcacgccataatcgcggaaatcgatggttacgtgcgcttcggc
aaggactacaagaacaagcgccgcatcgcgatcgagccgtcggaagagggtggcagcccg
gttgagtacatggtgccgaaaggcaagcacatcccggtgcaggaaggcgacttcgtgcag
aagggtgactacatcatggacggcaacccggcgccgcacgacatcctgcggatcatgggg
atcgaggcgctggccgactacctcatcgacgaggtgcaggacgtctatcgactgcagggc
gtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcagaagatcgag
atcctcgacagcggcgacaccacgctgctgaagggcgagcatgtcgagcgcgacgagttc
caggaagagaacgccaagatcgaagccaagggtggccgtccggccacgggcgagccggtg
ctgctgggcatcaccaaggcatcgctgcagacccgcagcttcatctcggccgcatcgttc
caggaaacgacccgcgtgctgaccgaggcgtcggtgcagggcaagcgcgacaagctggtc
ggtctgaaggaaaacgtcatcgtcggccgtctgatcccggctggtaccggtggcgcgacc
acccgcgtgcgtcgcatcgccgccgagcgtgacaacgaggtcattcaggcccgcaaggcc
gaggcggaaaccgccgcagcccttgccgcgcccgacatgaccgacagcgcgcccgcgacg
gacagtgtcgtcatcgacatgcccgaaggaaacggcgacgcgtga
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integrated database retrieval system
