Paracoccus homiensis: ACLISE_04710
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Entry
ACLISE_04710 CDS
T11345
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
phoi Paracoccus homiensis
Pathway
phoi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
phoi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ACLISE_04710 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phoi03400
]
ACLISE_04710 (mfd)
Enzymes [BR:
phoi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACLISE_04710 (mfd)
DNA repair and recombination proteins [BR:
phoi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ACLISE_04710 (mfd)
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XMR59712
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Position
915726..919172
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AA seq
1148 aa
AA seq
DB search
MSEQLILSGAPEGYDAALIAREAARGQPVIHVARDDRRMVATRAALEFLSPGLVVLDFPA
WDTTPYDRVSPAPEVQAARMATLAGLAQGAIKGPFVLLTTLNAVMQRVPARDVVTRASFA
AAVGDRIDEAGLREFLVRMGFVQSPTVTEPGDYAIRGGIIDIFPPGEGGPVRLDLFGDVL
DGARRFDPVSQRTTEKLDRVELAPMSEVILDEDAITRFRQNYRTEYGGGTNDPLYEGVSA
GRKMAGTEHWLPWFHDRMESLFDYLPSASVVLDDHIGQVADARREMIGEQFQARRAALAA
KGRSDTVYKPVPLDLMFPPEDEWNRWLSGHRVLRLSALAQPPGPGVLDAGGRPGRNFAPE
RQAESINLFKALADHVRALGKDHRVVLACFSDGARERLTGLLTDEGLGGLQSITNIRDLP
PKPGTVGLAVWPLDEGFVAQGQAMGAIAVVSEQDVLGDRLIRGAKKRRRAENFLQDTTSL
TPGDLVVHVEHGIGRYTGLETITAAGVPHDCVALEYAGGDRLFLPVENIELLSRYGHEEG
MLDRLGGGAWQARKARLKERIKLIADKLMRIAAERLLRPAPVLEPEDHDWQAFAARFPYS
ETDDQMAAIEDVAEDLAAGRPMDRLVVGDVGFGKTEVAMRAAFIAASQGMQVAVVAPTTL
LARQHFKTFAERFRGTAINVRPLSRFVTAKDATQTRSGLSDGSVDIVIGTHAVLAKQVRF
KNLGLLIIDEEQHFGVAHKERLKELRSDIHVLTLTATPIPRTLQLSLTGVRDLSVIGTPP
VDRLAIRTYVSEFDSVTIREALLREKYRGGQSFFVVPRLSDLPDVEHWLTENMPEISFIT
AHGQLAAGDLDQRMNAFYDGSHDVLLATTIVESGLDIPTANTMIVWRADMFGLSQLYQIR
GRVGRSKTRAYCYLTTKPRQPLTPQAMRRLKFLGSIDGLGAGFNLASQDLDLRGAGNLLG
EEQSGHIKEVGFELYQQMLEETIAKLKSGEIEGTPEDEWAPQLNLGVPVTIPESYIPDLD
VRLGLYRRLAELTTKVELEGFAAELIDRFGTLPREVNTLLLVIRIKAMAKRANISRLDAG
PKGATVQFHNDKFPNPAGLVEFLSDQHGMAKVTDNKIVLRRDWASDADRIKGSFAIARDL
AAKAKVKT
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaacagctgatcctttccggtgcccccgagggctatgacgccgccctgatcgcg
cgcgaggccgcgcggggccagcccgtgatccatgtcgcccgcgacgaccgccggatggtg
gcgacccgcgccgcgctggaattcctgtcgccggggctggtcgttctggactttccggca
tgggacacgacgccttatgaccgcgtctcgcccgcgcccgaggtgcaggccgcgcgcatg
gcgacgctggccgggttggcgcagggggcgatcaaggggccttttgttctgctgaccacg
ctgaacgcggtgatgcagcgggtgcccgcccgtgatgtcgtgacacgggccagctttgcc
gccgcggtcggtgatcgcatcgacgaagcgggcctgcgcgaatttctggtgcgcatgggc
tttgtgcagtcgcccaccgtgaccgagccgggcgattacgccattcgcggcggcatcatc
gacatctttccgccgggcgagggcgggccggtccggttggatctgttcggcgacgttctg
gacggcgcgcgccgtttcgatccggtcagccagcgcacgaccgagaaactggaccgggtc
gaactggcccccatgtccgaagtcattctggacgaagatgcgatcacccgctttcgccag
aactatcgcaccgaatatggcggcggcaccaatgatccgctgtatgaaggcgtcagcgcc
ggacgcaagatggcgggcaccgaacattggctgccgtggtttcacgaccggatggaaagc
ctgttcgattatctgccatcggcatcggtcgttctggacgatcatatcgggcaggtcgcg
gatgcccgccgcgagatgatcggcgaacagtttcaggcccgccgcgccgccctggccgcc
aaggggcgcagcgacacggtctataagcccgtgcccctcgatctgatgttcccgcccgag
gacgaatggaaccgctggctgtcggggcatcgcgtcctgcgtctgtcggccttggcgcag
ccgccggggccgggtgttctggatgcgggcgggcgaccggggcgcaatttcgcaccggaa
cgtcaggcggaatccatcaacctgttcaaggcgcttgccgatcacgtgcgggcgttgggc
aaggatcatcgggtggtgctggcctgtttctcggacggggcgcgcgaacgtctgaccggg
ctgttgaccgatgagggtctgggcggcctgcagtcgatcaccaatatccgcgatctgccc
cccaagccgggcacggtcggtctggcggtctggccgctggatgaaggcttcgtcgcccaa
gggcaggcgatgggtgccattgccgtcgtctcggaacaggatgtgctgggcgaccggttg
atccggggcgcgaagaaacgtcgccgcgccgagaatttcctgcaggacacgaccagcctg
acccccggggatctggtggtgcatgtcgaacacgggatcggccgctataccgggctggaa
accatcaccgccgccggcgtgccgcatgattgcgtcgcgctggaatatgcgggcggcgat
cgcctgttcctgccggtcgagaatatcgaactgctgtcgcgctatggccatgaagagggc
atgctggaccgtctgggcggcggggcatggcaggcccgcaaggcacggctgaaggaacgc
atcaagctgatcgcggacaagctgatgcgcattgcggccgaacgcctgctgcggcccgcc
ccggtgctggagcctgaagatcacgactggcaggcatttgccgcgcggttcccctatagc
gaaaccgacgaccagatggccgcgatcgaggatgtggccgaggatctggccgcgggtcgc
ccgatggatcgtctggtcgtgggcgatgtggggttcggcaagaccgaggtcgcgatgcgc
gcggccttcatcgccgccagtcaggggatgcaggtcgccgttgtcgcgccgacgacgctg
ctggcccgtcagcatttcaagactttcgccgaacggtttcgcggaaccgcgatcaatgtc
cgcccgctgtcgcgtttcgtgaccgccaaggacgccacccagacccgcagcggtctgtcg
gatggcagtgtcgatatcgtcatcggcacccatgcggtcctggccaagcaggttcgcttc
aagaatctgggcctgctgatcatcgacgaggaacagcatttcggcgtggcccacaaggaa
cgcctgaaagagctgcgcagcgacatccatgtgctgaccctgaccgcgacgccgattccg
cgcacgctgcaattgtcgctgaccggggtgcgcgatctgtcggtcatcggcacgccgccg
gtcgaccgtctggcgatccgcacctatgtcagcgaattcgacagcgtcaccatccgagag
gcgctgctgcgcgagaaataccgcggcgggcaaagctttttcgtggtgccgcgcctgtcc
gatctgcccgatgtcgaacattggctgaccgagaacatgccggaaatcagcttcatcacc
gcgcatggccaattggcggcgggcgatctggatcagcggatgaacgcattctacgacggc
agccatgatgttctgctggcgacgacgatcgtggaatcggggctggatattcccacggcg
aacacgatgatcgtgtggcgtgccgatatgttcggcctgtcgcaactgtatcagatccgt
gggcgggtgggccggtccaagacccgtgcctattgctatctgaccaccaagccgcgccag
ccgctgaccccgcaggcgatgcgccggctgaaattcctgggcagcatcgacgggcttggc
gcgggcttcaaccttgcctcgcaggatctggacctgcgtggggccggcaatctgctgggc
gaggaacaatccggccatatcaaggaggtcgggttcgaactgtatcagcagatgctggaa
gaaacgatcgccaagctgaaatccggcgagatcgagggcacgcccgaggatgaatgggcg
ccgcagctgaaccttggggtgccggtgacgatccctgaaagctatatccccgatctggat
gtgcggctgggcctgtatcgccgtctggccgaattgaccaccaaggtcgagctagaggga
tttgccgccgaactgatcgaccgtttcggcaccttgccgcgcgaggtgaacaccctgctg
ctggtcatccgcatcaaggcgatggcgaagcgggcgaatatctcgcggctggatgcgggg
ccgaaaggcgcgacggtgcagttccacaacgacaagttccccaatcccgccgggctggtc
gaattcctgtccgatcagcacggcatggcaaaagtcaccgacaacaagatcgtgctgcgg
cgtgactgggcatccgatgccgaccggatcaagggcagcttcgccatcgcccgcgatctg
gcggccaaggccaaggtcaagacgtga
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